Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H15
         (896 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /...    29   3.2  
At2g45570.1 68415.m05667 cytochrome P450 76C2, putative (CYP76C2...    29   5.5  
At2g02120.1 68415.m00148 plant defensin-fusion protein, putative...    28   9.7  

>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory / CAF
            identical to RNA helicase/RNAseIII CAF protein
            GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
          Length = 1909

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/54 (33%), Positives = 31/54 (57%)
 Frame = +2

Query: 242  AVNLGFQVARAMVNKCVCDNFLKTRGSRTKTDNQTTSTGLYYVRV*SIVSQIRI 403
            ++++   VARAM+ K      L  +GS   T+NQ +S   ++VR+ SIV  + +
Sbjct: 1023 SMSMDLYVARAMITKAS----LAFKGSLDITENQLSSLKKFHVRLMSIVLDVDV 1072


>At2g45570.1 68415.m05667 cytochrome P450 76C2, putative (CYP76C2)
           (YLS6) identical to SP|O64637 Cytochrome P450 76C2 (EC
           1.14.-.-) {Arabidopsis thaliana}, cDNA YLS6 mRNA for
           cytochrome P450 (CYP76C2), partial cds GI:13122289
          Length = 512

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 363 YNPVEVVWLSVFVREPRVLRKLSQTHLFTIAR 268
           ++ V VVWL       R+LRKLS T LF+  R
Sbjct: 116 HDKVSVVWLPPSSSRWRLLRKLSATQLFSPQR 147


>At2g02120.1 68415.m00148 plant defensin-fusion protein, putative
           (PDF2.1) plant defensin protein family member, personal
           communication, Bart Thomma
           (Bart.Thomma@agr.kuleuven.ac.be); contains a
           gamma-thionin family signature (PDOC00725)
          Length = 77

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 223 TACDQLCRELGFPSGACDGEQMR 291
           T C+ +C   GFP G C G + R
Sbjct: 48  TNCENVCHNEGFPGGDCRGFRRR 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,698,690
Number of Sequences: 28952
Number of extensions: 339031
Number of successful extensions: 818
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)