BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_H15 (896 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 29 3.2 At2g45570.1 68415.m05667 cytochrome P450 76C2, putative (CYP76C2... 29 5.5 At2g02120.1 68415.m00148 plant defensin-fusion protein, putative... 28 9.7 >At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory / CAF identical to RNA helicase/RNAseIII CAF protein GB:AAF03534 GI:6102610 from [Arabidopsis thaliana] Length = 1909 Score = 29.5 bits (63), Expect = 3.2 Identities = 18/54 (33%), Positives = 31/54 (57%) Frame = +2 Query: 242 AVNLGFQVARAMVNKCVCDNFLKTRGSRTKTDNQTTSTGLYYVRV*SIVSQIRI 403 ++++ VARAM+ K L +GS T+NQ +S ++VR+ SIV + + Sbjct: 1023 SMSMDLYVARAMITKAS----LAFKGSLDITENQLSSLKKFHVRLMSIVLDVDV 1072 >At2g45570.1 68415.m05667 cytochrome P450 76C2, putative (CYP76C2) (YLS6) identical to SP|O64637 Cytochrome P450 76C2 (EC 1.14.-.-) {Arabidopsis thaliana}, cDNA YLS6 mRNA for cytochrome P450 (CYP76C2), partial cds GI:13122289 Length = 512 Score = 28.7 bits (61), Expect = 5.5 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -3 Query: 363 YNPVEVVWLSVFVREPRVLRKLSQTHLFTIAR 268 ++ V VVWL R+LRKLS T LF+ R Sbjct: 116 HDKVSVVWLPPSSSRWRLLRKLSATQLFSPQR 147 >At2g02120.1 68415.m00148 plant defensin-fusion protein, putative (PDF2.1) plant defensin protein family member, personal communication, Bart Thomma (Bart.Thomma@agr.kuleuven.ac.be); contains a gamma-thionin family signature (PDOC00725) Length = 77 Score = 27.9 bits (59), Expect = 9.7 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = +1 Query: 223 TACDQLCRELGFPSGACDGEQMR 291 T C+ +C GFP G C G + R Sbjct: 48 TNCENVCHNEGFPGGDCRGFRRR 70 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,698,690 Number of Sequences: 28952 Number of extensions: 339031 Number of successful extensions: 818 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 771 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 818 length of database: 12,070,560 effective HSP length: 81 effective length of database: 9,725,448 effective search space used: 2110422216 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -