Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_H14
(856 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.84
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 27 2.6
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 27 3.4
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 27 3.4
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 27 4.5
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 27 4.5
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 4.5
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom... 27 4.5
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 26 5.9
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.1 bits (62), Expect = 0.84
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = -3
Query: 734 SASSLMLTAYVVAXTAFAISLVXWAVSKPTSTSRTLLSVVNSISSRLTFVEVVSVGSATG 555
S+SS TA + ++ IS + S PTSTS T+ S +S SS + +S S++
Sbjct: 255 SSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSS 314
Query: 554 LLLSS 540
SS
Sbjct: 315 SSFSS 319
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 27.5 bits (58), Expect = 2.6
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Frame = +1
Query: 466 VNSEGSWVYEKDVLKITFPLKQ-KQPEDSKRPVAEPTETTSTNVSREEMEFTTESNV--R 636
VNS G+ E + F ++ ++ E+ K + P + S+EE E R
Sbjct: 323 VNSPGALSVEATYINQNFCVQALRETEEEKYKLPHPNPFYN---SKEESEPLAAHGYIYR 379
Query: 637 DVDVGLETAXKTNEIAKAVXATTYAVNIRDDAEFL 741
DVD+ LET K ++ Y N +D +++
Sbjct: 380 DVDLSLETDEKPVKLMVRTEVDGYVKNPANDVQYI 414
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 128 PRHSTTMARHIGRITITT-PSVLTFGKACWTHI 223
P H+TT R I +I I PS+LT G +C HI
Sbjct: 553 PVHATT--RFIAQIAILELPSILTTGYSCVMHI 583
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +1
Query: 202 ESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRVEGDKYQISIHLPGYEQKDIN 381
E + + +W+++ +MQ D ++L F I N G++ Q +I L G + ++
Sbjct: 104 EGSTNVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGKLR-TLLQNAIVLLGQQTTNVA 162
Query: 382 VKAKN 396
K N
Sbjct: 163 SKKLN 167
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 26.6 bits (56), Expect = 4.5
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +1
Query: 166 YHHYDPFSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRV 321
+ Y F +E +T S + NL E+++L NM+ EL KFP + GR+
Sbjct: 1484 FTQYRLFDVRGKERTSNTMSTY-NL-EEVEYLVNMVDELLNKFPDVNFTGRI 1533
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 677 RSRKLXKRPRTLSTSETMRSSXPIP 751
RS L K RT+ ++T+R S PIP
Sbjct: 119 RSDALAKHMRTVHEADTLRPSDPIP 143
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +1
Query: 523 LKQKQPEDSKRPVAEPTETTSTNVSREEMEFTTESNVRDVD 645
+K ++PE + +PV + ST + +E E T +++V +
Sbjct: 908 IKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSSTE 948
>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 217
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/61 (21%), Positives = 27/61 (44%)
Frame = +1
Query: 553 RPVAEPTETTSTNVSREEMEFTTESNVRDVDVGLETAXKTNEIAKAVXATTYAVNIRDDA 732
R + ++ V E+ E T + DV++ + + + N +A+ T+ + DD
Sbjct: 118 RQTIDRKKSLERRVREEQEEKTDNEDDNDVEISTQESLENNGLAEKKDDTSSLATLEDDI 177
Query: 733 E 735
E
Sbjct: 178 E 178
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 671 VXWAVSKPTSTSRTLLSVVNSISSRLTFVEVVSVGSATGLLL 546
V WA+ T L++++S+ T +SV +A GLLL
Sbjct: 88 VWWAIRTITHLEIVGLNILSSLKYGSTLFSWISVANAFGLLL 129
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,771
Number of Sequences: 5004
Number of extensions: 62537
Number of successful extensions: 211
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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