Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H14
         (856 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22060.1 68414.m02759 expressed protein                             31   0.98 
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa...    31   1.3  
At3g47030.1 68416.m05107 F-box family protein contains F-box dom...    29   3.0  
At3g12200.1 68416.m01521 protein kinase family protein contains ...    29   3.0  
At1g52560.1 68414.m05933 26.5 kDa class I small heat shock prote...    29   3.0  
At3g18370.1 68416.m02336 C2 domain-containing protein contains P...    29   5.2  
At1g16540.1 68414.m01981 molybdenum cofactor sulfurase (LOS5) (A...    29   5.2  
At3g42800.1 68416.m04480 expressed protein hypothetical proteins...    28   6.9  
At5g57230.1 68418.m07150 expressed protein                             28   9.1  
At5g55540.1 68418.m06919 expressed protein                             28   9.1  
At5g12970.1 68418.m01487 C2 domain-containing protein contains I...    28   9.1  

>At1g22060.1 68414.m02759 expressed protein
          Length = 1999

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 202  ESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINE 312
            E MLDT   +S++  E++ + +   +LSLKF  +  E
Sbjct: 1932 EEMLDTKGRYSSMETELREMHDRYSQLSLKFAEVEGE 1968


>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
           putative ATP-dependent helicases
          Length = 1058

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/98 (21%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
 Frame = +1

Query: 319 VEGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLPWDVNSEGSWVYEK 498
           + G+   + +   G   +D+    K+      ++S F+ Y+K + L  D       + + 
Sbjct: 20  INGESTTVQVSSDG-TIRDLKKALKSCFPPASSSSNFHLYIKGEKLKLDTRVAAITINDG 78

Query: 499 DVLKITFPLKQKQPEDSKRP-VAEPTETTS-TNVSREE 606
           D+L + FP K+K+   + +P +++P+  +S T+  ++E
Sbjct: 79  DILGL-FPFKKKELRQTPKPDLSKPSSLSSRTSTMKDE 115


>At3g47030.1 68416.m05107 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 414

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = -2

Query: 738 ELRIVSDVDSVRGRXYSFRDLIGLXGCLQADVNVPHVAL--GGELHLFTTYIR 586
           ELR+++DVD V+     + +L      L AD++V  V +   GE+ L T++IR
Sbjct: 305 ELRVLNDVDEVKWSQIIY-ELPNYWNNLPADIDVSIVGMTSAGEIVLATSHIR 356


>At3g12200.1 68416.m01521 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 571

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = +1

Query: 499 DVLKITFPLKQKQPEDSKRP--VAEPTETTST-NVSREEME--FTTESNVRDVDVGLETA 663
           D LKI+    QK  E    P      TET +  N   +E E  F+ ES +RDVDVG+ +A
Sbjct: 369 DTLKISEFTSQKSDESLIDPDIAVYSTETPAEENALPKETENIFSEESQLRDVDVGVVSA 428


>At1g52560.1 68414.m05933 26.5 kDa class I small heat shock
           protein-like (HSP26.5-P) contains Pfam profile: PF00011
           Hsp20/alpha crystallin family; identified in Scharf,
           K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 232

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/79 (15%), Positives = 40/79 (50%)
 Frame = +1

Query: 184 FSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRVEGDKYQISIHLPGY 363
           F+P + E    T  + + L    ++++ +    ++    ++ + + + D Y++   +PG 
Sbjct: 88  FTPTLNEFFPPT--IGNTLIQATENMNRIFDNFNVNPFQLMGQVKEQDDCYKLRYEVPGL 145

Query: 364 EQKDINVKAKNGVLMVQAN 420
            ++D+ +   +G+L ++ +
Sbjct: 146 TKEDVKITVNDGILTIKGD 164


>At3g18370.1 68416.m02336 C2 domain-containing protein contains Pfam
           profile: PF00168 C2 domain
          Length = 815

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 244 NEMQHLDNMMKELSLKFPSIINEGRVEG 327
           N+   L N MK++ +KF ++I++G +EG
Sbjct: 735 NKALLLSNQMKQVMIKFQNLIDDGDLEG 762


>At1g16540.1 68414.m01981 molybdenum cofactor sulfurase (LOS5)
           (ABA3) identical to molybdenum cofactor sulfurase
           (LOS5/ABA3) [Arabidopsis thaliana] GI:15407262;
           supporting cDNA gi|15407261|gb|AY034895.1|
          Length = 819

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 590 FVEVVSVGSATGLLLSSGCFCFSGKVIFNTSFS*TQLPSEFTSQGRFC 447
           ++EV  + S +G+ L +GCFC  G        S ++L S     G  C
Sbjct: 410 YLEVEKLASLSGIQLRTGCFCNPGACAKYLELSHSELRSN-VEAGHIC 456


>At3g42800.1 68416.m04480 expressed protein hypothetical proteins -
           Arabidopsis thaliana; expression supported by MPSS
          Length = 341

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -3

Query: 653 KPTSTSRTLLSVVNSI-SSRLTFVEVVSVGSATGLLLSSGCFCFS 522
           +P S    L S +NSI  S    V++ SVG  T +  SS   CFS
Sbjct: 155 QPVSPGARLTSFLNSIFQSNAKKVKLCSVGKTTDVKSSSSKSCFS 199


>At5g57230.1 68418.m07150 expressed protein 
          Length = 160

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 241 ANEMQHLDNMMKELSLKFPSIINEGRVEGDKY 336
           +N  QHLD M++E + +F   I   RVE  KY
Sbjct: 60  SNYTQHLDRMLEEAAAEFYPNIKFMRVECPKY 91


>At5g55540.1 68418.m06919 expressed protein
          Length = 1380

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 262 DNMMKELSLKFPSIINEGRVEGDKYQISIH 351
           D    + SL  PSI+ EGR +  K+QI+ H
Sbjct: 866 DPSSPDSSLLVPSILEEGRGKTQKWQINTH 895


>At5g12970.1 68418.m01487 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 769

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 294 PQHYKRRTR-GRRQVSDIYSPAWLRTERHQRESEKWSADGA 413
           PQ Y+   R GR+   ++    W+ T+  +  S+ W +D A
Sbjct: 140 PQWYRLEDRHGRKVKGELMLAVWMGTQADEAFSDAWHSDAA 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,201,014
Number of Sequences: 28952
Number of extensions: 330423
Number of successful extensions: 1111
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)