Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H13
         (902 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    79   2e-13
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    71   3e-11
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    66   9e-10
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    64   4e-09
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    58   3e-07
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    44   0.004
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ...    43   0.009
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    42   0.022
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.087
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0...    36   1.1  
UniRef50_A5P062 Cluster: Putative uncharacterized protein; n=2; ...    34   4.3  
UniRef50_Q12GC2 Cluster: Putative uncharacterized protein precur...    34   5.7  
UniRef50_A6WEC5 Cluster: Putative uncharacterized protein; n=1; ...    33   10.0 

>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 79.0 bits (186), Expect = 2e-13
 Identities = 36/36 (100%), Positives = 36/36 (100%)
 Frame = +2

Query: 557 TSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLF 664
           TSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLF
Sbjct: 24  TSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLF 59



 Score = 57.2 bits (132), Expect = 5e-07
 Identities = 24/33 (72%), Positives = 25/33 (75%)
 Frame = +3

Query: 633 PWKLPRALSCFRPXRLPDTCPPFSLREAWRFLI 731
           P + P     FRP RLPDTCPPFSLREAWRFLI
Sbjct: 49  PLEAPSCALLFRPCRLPDTCPPFSLREAWRFLI 81


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 71.3 bits (167), Expect = 3e-11
 Identities = 32/36 (88%), Positives = 33/36 (91%)
 Frame = +2

Query: 557 TSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLF 664
           TSITK DAQ+ GGETRQDYKDTRRFPL APSCALLF
Sbjct: 60  TSITKSDAQISGGETRQDYKDTRRFPLAAPSCALLF 95


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 66.5 bits (155), Expect = 9e-10
 Identities = 30/36 (83%), Positives = 31/36 (86%)
 Frame = +2

Query: 557 TSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLF 664
           TSI K DAQ+ GGETRQDYKD RRFPL APSCALLF
Sbjct: 92  TSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLF 127



 Score = 60.9 bits (141), Expect = 4e-08
 Identities = 49/127 (38%), Positives = 63/127 (49%), Gaps = 6/127 (4%)
 Frame = +1

Query: 322 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQERTCEQKASKRP 501
           R   +C  G +PLPRSLTR ARSFGCGERY+LT           G   E T  +  SK  
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT--------DGDGNFLEDT-RKTLSKEE 76

Query: 502 GTVKRPRCWRFSIGSAPLNEHHKN------RRSSQRWRNPTGL*RYQAFPPGSSLVRSPV 663
               RPR  RFSIGSAPL    K+        + Q +++P    R+    P  +L+  P 
Sbjct: 77  ---IRPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPR---RFPLVAPSCALLFLPF 130

Query: 664 SDPXAYR 684
             P ++R
Sbjct: 131 GLPVSFR 137


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 64.5 bits (150), Expect = 4e-09
 Identities = 30/38 (78%), Positives = 30/38 (78%)
 Frame = -3

Query: 498 PFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERP 385
           P    LLTCSF  YPLILWITVLPPLSEL PLAA ERP
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 58.0 bits (134), Expect = 3e-07
 Identities = 32/57 (56%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +1

Query: 298 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 465
           CI + A AR EAV VL ALPL RS TRC RS GCG      +  R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 44.4 bits (100), Expect = 0.004
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +3

Query: 417 HSKAVIRLSTESGDNAGKNM 476
           HSKAVIRLSTESGDNAGKNM
Sbjct: 40  HSKAVIRLSTESGDNAGKNM 59


>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
           Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
           Beggiatoa sp. SS
          Length = 114

 Score = 43.2 bits (97), Expect = 0.009
 Identities = 20/49 (40%), Positives = 31/49 (63%)
 Frame = +2

Query: 521 VAGVFXXXXXXXTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFP 667
           ++ +F       T+ITKI  Q +  +T+ +YK T  FPL++PS +LLFP
Sbjct: 65  LSSLFPYNSPPLTTITKIYPQFKNTQTQHNYKYTTPFPLQSPSYSLLFP 113


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 41.9 bits (94), Expect = 0.022
 Identities = 22/41 (53%), Positives = 26/41 (63%)
 Frame = +2

Query: 224 INKLTTTIAFILCFRFRXEVWEVFSALMNRPTRGERRFAYW 346
           +++LT      L  RF      V +ALMNRPTRGERRFAYW
Sbjct: 1   MSELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.9 bits (89), Expect = 0.087
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -1

Query: 368 ERGSGRAPNTQTASPRALADSLMQ 297
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_UPI00015C640B Cluster: hypothetical protein
           CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
           BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
           Citrobacter koseri ATCC BAA-895
          Length = 99

 Score = 36.3 bits (80), Expect = 1.1
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = -3

Query: 711 PEGRKADRYPVSXRVGNRRAHEGASRGKRLVSL*SCRVSPPLT 583
           P+G+KA++     +  NRRAHEGA+  K   SL      PPLT
Sbjct: 57  PKGKKAEQVSGKRQGRNRRAHEGAAGEKSPASLSPVGFRPPLT 99


>UniRef50_A5P062 Cluster: Putative uncharacterized protein; n=2;
           Proteobacteria|Rep: Putative uncharacterized protein -
           Methylobacterium sp. 4-46
          Length = 829

 Score = 34.3 bits (75), Expect = 4.3
 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
 Frame = +1

Query: 442 PQNQGITQERTCEQKASKR--PGTVKRPRCWRFSIGSAPLNEHHKNRRSSQRWRNPTGL* 615
           P  +G    R    +  +R  PG    PR  R S G A      ++RR  +  R+P G  
Sbjct: 702 PDGRGRASPRARRTRNGRRSWPGPPPAPRAPRRSAGPARPARRRRSRRCGRSSRSPAGRR 761

Query: 616 RYQAFPPGSSLVRSPVSDPXAYR 684
           R     P  +  R P S P  +R
Sbjct: 762 RAPGTRPRRAAGRRPASGPCRWR 784


>UniRef50_Q12GC2 Cluster: Putative uncharacterized protein
           precursor; n=2; Polaromonas|Rep: Putative
           uncharacterized protein precursor - Polaromonas sp.
           (strain JS666 / ATCC BAA-500)
          Length = 268

 Score = 33.9 bits (74), Expect = 5.7
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -3

Query: 507 GSWPFAGLLLTCSFLRYP---LILWITVLPPLSELIPLAAAERP 385
           G W  +G  L    L++    LI+W+  LPPL++ IP+A+ + P
Sbjct: 158 GVWLSSGNALPWGLLQFGGMGLIVWLACLPPLADEIPMASGDSP 201


>UniRef50_A6WEC5 Cluster: Putative uncharacterized protein; n=1;
           Kineococcus radiotolerans SRS30216|Rep: Putative
           uncharacterized protein - Kineococcus radiotolerans
           SRS30216
          Length = 168

 Score = 33.1 bits (72), Expect = 10.0
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
 Frame = -2

Query: 721 RHASRREKGGQVSGKRQGRKQESARGSFQG--ETPGIFIVLSGFATSDLSVDFCDARSGG 548
           R ASR ++  Q+  +R+  +Q++A  +     +  G  +V +  A +  ++ F DARS G
Sbjct: 34  RTASRADRAQQLPTQRRAPRQQAAVAALDAALQESGCILVSTSVAEAGCTLAFYDARSLG 93

Query: 547 RSLWKNASNAA 515
           R++   AS AA
Sbjct: 94  RAVDVIASAAA 104


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 619,521,579
Number of Sequences: 1657284
Number of extensions: 11491219
Number of successful extensions: 32867
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 31362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32834
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81981722200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)