Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H12
         (1098 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    32   0.16 
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    29   1.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.0  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   6.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   6.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   6.1  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = -2

Query: 140  PPPRPXPXXXXXLXXPIPPXPPXPPXPPTLX*RAPLXPXXG 18
            PPP P          P+P  PP  P PP     AP  P  G
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747



 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/38 (34%), Positives = 14/38 (36%)
 Frame = -2

Query: 140  PPPRPXPXXXXXLXXPIPPXPPXPPXPPTLX*RAPLXP 27
            PP RP       +  P PP PP    PP      P  P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGP 1727


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 589

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 1030 PSXPXXPTTPXRPXXKPPXPPP 1095
            P+ P  P  P  P  +PP PPP
Sbjct: 166  PAMPPIPFLPFNPAAQPPFPPP 187


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 17/66 (25%), Positives = 20/66 (30%)
 Frame = +2

Query: 896  PXPAKXCPAXXESPXAPXTEXXPNKRPNHKXXXARPPTXXXXXPDPPXPXXPRPPXXPXX 1075
            P P+   P+      AP         P  K   A PP        PP P     P  P  
Sbjct: 1067 PAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKP 1126

Query: 1076 NHPXPP 1093
            +   PP
Sbjct: 1127 SVAAPP 1132



 Score = 28.3 bits (60), Expect = 2.0
 Identities = 18/64 (28%), Positives = 23/64 (35%)
 Frame = +2

Query: 866  PPXTXXSTXXPXPAKXCPAXXESPXAPXTEXXPNKRPNHKXXXARPPTXXXXXPDPPXPX 1045
            PP    S+  P   K  PA    P  P +E  P  +P+       PP+     P P    
Sbjct: 1169 PPVPAPSSGIPPVPK--PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGL 1226

Query: 1046 XPRP 1057
             P P
Sbjct: 1227 PPVP 1230



 Score = 27.5 bits (58), Expect = 3.5
 Identities = 20/78 (25%), Positives = 23/78 (29%), Gaps = 2/78 (2%)
 Frame = +2

Query: 866  PPXTXXSTXXPXPAKXCPAXXESPXAPXTEXXPNKRPNHKXXXARPPTXXXXXPDPPXPX 1045
            P  +  +   P P+   P    S  AP         P  K   A PP        PP P 
Sbjct: 1124 PKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPK 1183

Query: 1046 XPR--PPXXPXXNHPXPP 1093
                 PP  P    P  P
Sbjct: 1184 PAAGVPPVPPPSEAPPVP 1201


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/45 (31%), Positives = 15/45 (33%)
 Frame = -2

Query: 140 PPPRPXPXXXXXLXXPIPPXPPXPPXPPTLX*RAPLXPXXGVGXL 6
           PP  P            PP PP  P PP     AP  P   +  L
Sbjct: 450 PPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAEL 494



 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -2

Query: 140 PPPRPXPXXXXXLXXPIPPXPPXPPXPP 57
           PPP P P        P+PP     P PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPP 364


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 331

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 15/49 (30%), Positives = 17/49 (34%)
 Frame = +2

Query: 944  PXTEXXPNKRPNHKXXXARPPTXXXXXPDPPXPXXPRPPXXPXXNHPXP 1090
            P     PN+    +     PP      PD P P  P P   P  N P P
Sbjct: 104  PREPPLPNEPVPEEPLPGEPPL-----PDEPVPEEPLPGEPPLPNEPVP 147


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 61  GXGGXGGXGGIGXXRXXYXXGXGRGGG 141
           G GG GG GG G     +    G GGG
Sbjct: 203 GPGGFGGFGGFGGEGHHHGGHGGFGGG 229


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
 Frame = +1

Query: 1030 PSXPXXPTTPX--RPXXKPPXPPPP 1098
            P  P  P  P    P  +PP PPPP
Sbjct: 6    PGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = -2

Query: 146 AXPPPRPXPXXXXXLXXPIPPXPPXPPXPPTLX*RAPLXP 27
           A PP  P P        P    PP P  PP     AP  P
Sbjct: 122 AAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIP 161


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 14/54 (25%), Positives = 16/54 (29%)
 Frame = +2

Query: 932  SPXAPXTEXXPNKRPNHKXXXARPPTXXXXXPDPPXPXXPRPPXXPXXNHPXPP 1093
            SP  P       ++         PP      P P     P PP  P    P PP
Sbjct: 711  SPLLPDVSDTVEEQQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = -2

Query: 140 PPPRPXPXXXXXLXXPIPPXPPXPPXPPTLX*RAPLXP 27
           P P P P        PI   PP PP PP +    P  P
Sbjct: 742 PTPAPAPIPVPP-PAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 140 PPPRPXPXXXXXLXXPIPPXPP 75
           PPP P P        P PP PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,724,471
Number of Sequences: 5004
Number of extensions: 17325
Number of successful extensions: 164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 579724962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)