Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H12
         (1098 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    27   0.29 
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    27   0.29 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   6.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.4  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6
          variant 2 precursor protein.
          Length = 94

 Score = 27.1 bits (57), Expect = 0.29
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 55 VGGXGGXGGXGGIG 96
          VGG GG GG GG+G
Sbjct: 19 VGGFGGFGGFGGLG 32


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6
          variant 1 precursor protein.
          Length = 92

 Score = 27.1 bits (57), Expect = 0.29
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 55 VGGXGGXGGXGGIG 96
          VGG GG GG GG+G
Sbjct: 19 VGGFGGFGGFGGLG 32


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 89  PPXPPXPPXPPT 54
           PP P  PP PP+
Sbjct: 338 PPKPAPPPPPPS 349


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 1054 TPXRPXXKPPXPPPP 1098
            T  R    PP PPPP
Sbjct: 1348 TAWRQQQPPPPPPPP 1362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,508
Number of Sequences: 438
Number of extensions: 3274
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 36873306
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)