BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_H11 (871 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 05_04_0204 - 19022329-19023990 30 2.8 06_03_0613 + 22748223-22749513,22750046-22750179,22751066-227513... 29 3.7 02_01_0223 + 1453478-1453750,1455788-1456018,1456066-1456200,145... 29 3.7 05_03_0188 + 9417186-9417306,9417418-9417604,9417669-9417801,941... 28 8.5 04_04_0065 + 22456225-22456744,22456813-22457768 28 8.5 >05_04_0204 - 19022329-19023990 Length = 553 Score = 29.9 bits (64), Expect = 2.8 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +1 Query: 280 IEKSCDKYMNVDVVKQFMEMYKMGMLPRGETF 375 + K CD++ + VVK F +M K G+ P TF Sbjct: 355 MRKLCDEHRWLSVVKLFTDMAKKGIAPNSWTF 386 >06_03_0613 + 22748223-22749513,22750046-22750179,22751066-22751309, 22751401-22751609,22751691-22751740,22751933-22752053, 22752138-22752383 Length = 764 Score = 29.5 bits (63), Expect = 3.7 Identities = 16/56 (28%), Positives = 31/56 (55%) Frame = -3 Query: 425 TRKTLTASSIWSSLVWTKVSPRGSMPILYISMNCLTTSTFMYLSQLFSMLYSLAIS 258 +R TL + +W L K+ ++ +L ++ NCL + + S+++S L SL +S Sbjct: 118 SRLTLASLGVWGELPGAKLHRLQALRVLNLTGNCLYGAVPEHFSRMYS-LQSLVLS 172 >02_01_0223 + 1453478-1453750,1455788-1456018,1456066-1456200, 1457918-1457971,1458417-1458482,1458593-1458679, 1459338-1459394,1459470-1459500,1459577-1459634, 1459710-1459761,1459881-1459917,1460008-1460210, 1460556-1460633,1460683-1460853,1461126-1461239 Length = 548 Score = 29.5 bits (63), Expect = 3.7 Identities = 15/39 (38%), Positives = 18/39 (46%) Frame = -2 Query: 636 HLHHKGFTDDMAVNEEVGIDLVRSGQVETLAVGSVEARG 520 H HH G D A EV D V + A G+V+ RG Sbjct: 24 HHHHDGAAGDSAAAAEVPQDKVVAAAAAAAAAGNVQRRG 62 >05_03_0188 + 9417186-9417306,9417418-9417604,9417669-9417801, 9418673-9418752,9421940-9422011,9422211-9422282, 9422361-9422432,9422720-9422791,9423038-9423109, 9423335-9423406,9423497-9423568,9423648-9423722, 9423824-9423895,9424072-9424137,9424223-9424299, 9424642-9425021,9425112-9425310,9425380-9425538, 9425620-9425738,9425942-9426092,9426257-9426488, 9426573-9426723,9426808-9427125 Length = 1007 Score = 28.3 bits (60), Expect = 8.5 Identities = 15/53 (28%), Positives = 29/53 (54%) Frame = +2 Query: 668 NTTAITVTDDHLVVIDWRKGVRRSLSQNDVMSYFMEDVDPNTYMYYLHMNYPF 826 N +A+TVT L++ K RR +++ DV+ ++ TY+ L++ Y + Sbjct: 152 NNSALTVTGCILLIAAIEKVYRRRVTKLDVVGPIPSELQNLTYLEDLNLGYNY 204 >04_04_0065 + 22456225-22456744,22456813-22457768 Length = 491 Score = 28.3 bits (60), Expect = 8.5 Identities = 11/36 (30%), Positives = 20/36 (55%) Frame = +2 Query: 710 IDWRKGVRRSLSQNDVMSYFMEDVDPNTYMYYLHMN 817 +DW G+ + L D S+F DP+ YM++ ++ Sbjct: 186 VDWTPGMSKHLRLKDFPSFF-RATDPDEYMFHFALH 220 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,709,778 Number of Sequences: 37544 Number of extensions: 439922 Number of successful extensions: 1079 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1055 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1079 length of database: 14,793,348 effective HSP length: 81 effective length of database: 11,752,284 effective search space used: 2444475072 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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