Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H10
         (966 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.56 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.2  
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    26   6.9  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 24/79 (30%), Positives = 24/79 (30%)
 Frame = +1

Query: 658 LGFLXFFPXSRGXGGXGFSXXXXNPPPPPGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGX 837
           LG L       G G  GF      PPP PG  G         F       G     GGG 
Sbjct: 176 LGNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGGF-----GGFGGEGHHHGGHGGFGGGP 230

Query: 838 RXSXPXXGGXXGFPXNSGG 894
                  GG  G P   GG
Sbjct: 231 GGFEGGPGGFGGGPGGFGG 249


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 730 PPPPPGEXGXXFFXPPXPFP 789
           PPPPPG  G     PP P P
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -3

Query: 187 PRPKPWRKQLAKHENENFSRIXILYFSRNSKLQTYRAATNL 65
           P PKP+ ++LA+  N+   R   L   + ++ Q+++   N+
Sbjct: 96  PLPKPFHERLAEARNQERKRSDKLKTMKKNRKQSFQRKRNI 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,611,352
Number of Sequences: 5004
Number of extensions: 40794
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)