Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_H10
(966 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 33 0.26
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_32138| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 31 1.4
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 29 5.6
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 29 7.5
SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9) 28 9.9
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 33.5 bits (73), Expect = 0.26
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = +1
Query: 730 PPPPPGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGXRXSXPXXGG 864
PPPP G+ G PP P P P GG P GG
Sbjct: 665 PPPPGGQAGGAPPPPPPPLPGGAAPPPPPPIGGGAPPPPPPGFGG 709
Score = 28.3 bits (60), Expect = 9.9
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = +1
Query: 730 PPPPPGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGXRXSXPXXGGXXGF 876
PPPPP G PP P P P G P G GF
Sbjct: 662 PPPPPPPGGQAGGAPPPPPPPLPGGAAPPPPPPIGGGAPPPPPPGFGGF 710
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 31.5 bits (68), Expect = 1.1
Identities = 23/77 (29%), Positives = 23/77 (29%), Gaps = 4/77 (5%)
Frame = -2
Query: 893 PPEFXGKPXXPPLXGXEX-RXPPPXXXXGPXXXLXXGXG---XGGXKXKXPXSPGGGGGX 726
PP P PP G PPP P G GG P PGG
Sbjct: 924 PPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPPGGGAPPLPPPPGGSAPP 983
Query: 725 XXXXENPFPPXPRDXGK 675
P PP R GK
Sbjct: 984 PPPPPPPPPPPMRKLGK 1000
>SB_32138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 83
Score = 31.5 bits (68), Expect = 1.1
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = -2
Query: 368 LGLYFNIINVVTFCGII*ALSLSESFGFCQGVDCWSRADDRRSRTL*P 225
L L N+IN V C + +S++++ GVDC +R+ R S TL P
Sbjct: 3 LSLVVNVINTVKLCSLDYRMSINQNNTGSDGVDC-NRSRRRLSLTLAP 49
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 31.1 bits (67), Expect = 1.4
Identities = 23/72 (31%), Positives = 23/72 (31%)
Frame = +1
Query: 679 PXSRGXGGXGFSXXXXNPPPPPGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGXRXSXPXX 858
P G G PP PPG G PP P P GP G P
Sbjct: 94 PGPNGVNGPPGELGDMGPPGPPGPPGPQM--PPGP-PGLPGPPGPAGPPGTNGELGPP-- 148
Query: 859 GGXXGFPXNSGG 894
G G P N GG
Sbjct: 149 -GDVGPPGNPGG 159
Score = 29.9 bits (64), Expect = 3.2
Identities = 20/57 (35%), Positives = 21/57 (36%)
Frame = +1
Query: 730 PPPPPGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGXRXSXPXXGGXXGFPXNSGGYP 900
PPPPPG G PP FP GP G P G G P + G P
Sbjct: 38 PPPPPGPPGPD--GPPG-FPGPQGPNGPKGPPGLPGPPGPPGFQGPPGNPAGAIGPP 91
>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 31.1 bits (67), Expect = 1.4
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -2
Query: 902 RGYPPEFXGKPXXPPLXGXEXRXPPPXXXXG 810
RG PP G P PPL G R PPP G
Sbjct: 93 RGGPPS-RGPPRGPPLPGPPRRGPPPDRDSG 122
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 29.1 bits (62), Expect = 5.6
Identities = 22/70 (31%), Positives = 23/70 (32%)
Frame = -2
Query: 899 GYPPEFXGKPXXPPLXGXEXRXPPPXXXXGPXXXLXXGXGXGGXKXKXPXSPGGGGGXXX 720
G+PP G P PP PPP P G GG P GG
Sbjct: 234 GHPP--MGAPP-PPHSMPPPGMPPPGMMPPPGFPPMGMPGMGGMPPPGMPPPMPPGGMPP 290
Query: 719 XXENPFPPXP 690
E P PP P
Sbjct: 291 NMEQPPPPPP 300
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 29.1 bits (62), Expect = 5.6
Identities = 25/85 (29%), Positives = 28/85 (32%), Gaps = 2/85 (2%)
Frame = -2
Query: 899 GYPPEFXGKPXXPPLXG-XEXRXPPPXXXXGPXXXLXXGXGXGGXKXKXPXSPGGG-GGX 726
G PP G+ PP G + PPP G G GG P PG G GG
Sbjct: 524 GQPPPGAGQGGGPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGG----GPPPPGAGQGGP 579
Query: 725 XXXXENPFPPXPRDXGKXKRKPXXG 651
P P G+ P G
Sbjct: 580 PPPGAGQEGPPPPGAGQGGGPPPPG 604
Score = 29.1 bits (62), Expect = 5.6
Identities = 20/57 (35%), Positives = 21/57 (36%)
Frame = -2
Query: 899 GYPPEFXGKPXXPPLXGXEXRXPPPXXXXGPXXXLXXGXGXGGXKXKXPXSPGGGGG 729
G PP G+ PP G PPP G G G GG P PG G G
Sbjct: 557 GQPPPGAGQGGGPPPPGAGQGGPPP-PGAGQEGPPPPGAGQGG----GPPPPGAGQG 608
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 28.7 bits (61), Expect = 7.5
Identities = 21/68 (30%), Positives = 23/68 (33%)
Frame = +1
Query: 697 GGXGFSXXXXNPPPPPGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGXRXSXPXXGGXXGF 876
G G+ NP PPG G PP P GP G P G G+
Sbjct: 1807 GAIGWKGNPGNPAGPPGLDGPP--GPPGP-------QGPKGWPGVPGPPGPPGAYGWKGY 1857
Query: 877 PXNSGGYP 900
P N G P
Sbjct: 1858 PGNPAGPP 1865
Score = 28.3 bits (60), Expect = 9.9
Identities = 21/70 (30%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Frame = +1
Query: 730 PPPPPGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGXRXSXPXXGGXXGFPXNSGGYP-RT 906
PPPPP G P P GP G P G G+P G P R
Sbjct: 1663 PPPPPPAPGPPGPDGPMGLPGPQGPDGPKGPPG---PPGLPGPQGIPGYPGAPAGPPGRD 1719
Query: 907 KXFXPXXPXG 936
P P G
Sbjct: 1720 GPMGPPGPSG 1729
>SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9)
Length = 233
Score = 28.3 bits (60), Expect = 9.9
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +1
Query: 730 PPPPPGEXGXXFFXPPXPFPXXXKXXGP 813
PPPPPG F PP P+ K GP
Sbjct: 123 PPPPPG-----VFTPPPPYRTTAKPKGP 145
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,979,045
Number of Sequences: 59808
Number of extensions: 358260
Number of successful extensions: 1149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2848211039
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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