Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_H10
(966 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 33 0.23
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 33 0.23
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 33 0.40
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 33 0.40
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 32 0.53
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 32 0.53
U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protei... 32 0.70
M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein. 32 0.70
Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical p... 30 2.8
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 30 2.8
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 30 2.8
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 30 2.8
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 29 3.7
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 29 3.7
U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protei... 29 3.7
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 29 3.7
U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical pr... 25 6.4
U41993-8|AAA83449.1| 497|Caenorhabditis elegans Temporarily ass... 29 6.5
U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily ass... 29 6.5
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 29 6.5
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 29 6.5
Z81592-1|CAB04725.1| 695|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 28 8.7
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 28 8.7
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 8.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 8.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 8.7
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 8.7
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 8.7
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 8.7
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 33.5 bits (73), Expect = 0.23
Identities = 22/71 (30%), Positives = 23/71 (32%), Gaps = 2/71 (2%)
Frame = +1
Query: 730 PPPPPGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGXRXSXPXXGGXXGFPXNSG--GYPR 903
PP PPG G P P G GG P G G P N G G P
Sbjct: 105 PPGPPGPDGSAGPAGPAGNPGADGDAGSPGEAGGAGPPGPPGPDGNPGAPGNDGEAGSPG 164
Query: 904 TKXFXPXXPXG 936
T+ P G
Sbjct: 165 TRSISSPGPAG 175
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 33.5 bits (73), Expect = 0.23
Identities = 22/71 (30%), Positives = 23/71 (32%), Gaps = 2/71 (2%)
Frame = +1
Query: 730 PPPPPGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGXRXSXPXXGGXXGFPXNSG--GYPR 903
PP PPG G P P G GG P G G P N G G P
Sbjct: 105 PPGPPGPDGSAGPAGPAGNPGADGDAGSPGEAGGAGPPGPPGPDGNPGAPGNDGEAGSPG 164
Query: 904 TKXFXPXXPXG 936
T+ P G
Sbjct: 165 TRSISSPGPAG 175
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 32.7 bits (71), Expect = 0.40
Identities = 20/67 (29%), Positives = 22/67 (32%)
Frame = +1
Query: 697 GGXGFSXXXXNPPPPPGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGXRXSXPXXGGXXGF 876
GG G+S PPPPP PP P P G G GG
Sbjct: 291 GGGGYSAPAAAPPPPPP-------PPPPPAPAPVSSGGGYSEQSSGGGGGSSYSGGGEAS 343
Query: 877 PXNSGGY 897
+ GGY
Sbjct: 344 SSSGGGY 350
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 32.7 bits (71), Expect = 0.40
Identities = 20/67 (29%), Positives = 22/67 (32%)
Frame = +1
Query: 697 GGXGFSXXXXNPPPPPGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGXRXSXPXXGGXXGF 876
GG G+S PPPPP PP P P G G GG
Sbjct: 291 GGGGYSAPAAAPPPPPP-------PPPPPAPAPVSSGGGYSEQSSGGGGGSSYSGGGEAS 343
Query: 877 PXNSGGY 897
+ GGY
Sbjct: 344 SSSGGGY 350
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 32.3 bits (70), Expect = 0.53
Identities = 22/75 (29%), Positives = 25/75 (33%)
Frame = +1
Query: 679 PXSRGXGGXGFSXXXXNPPPPPGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGXRXSXPXX 858
P + G G PP PPG G PP P P GP G + P
Sbjct: 216 PLTPGAPGEAGDAGPAGPPGPPGAPGND--GPPGP-PGPKGSPGPDGPAGVDGQAGPPGP 272
Query: 859 GGXXGFPXNSGGYPR 903
G G P G P+
Sbjct: 273 PGQAGTPGEKGICPK 287
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 32.3 bits (70), Expect = 0.53
Identities = 22/75 (29%), Positives = 25/75 (33%)
Frame = +1
Query: 679 PXSRGXGGXGFSXXXXNPPPPPGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGXRXSXPXX 858
P + G G PP PPG G PP P P GP G + P
Sbjct: 216 PLTPGAPGEAGDAGPAGPPGPPGAPGND--GPPGP-PGPKGSPGPDGPAGVDGQAGPPGP 272
Query: 859 GGXXGFPXNSGGYPR 903
G G P G P+
Sbjct: 273 PGQAGTPGEKGICPK 287
>U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protein
14 protein.
Length = 345
Score = 31.9 bits (69), Expect = 0.70
Identities = 20/67 (29%), Positives = 21/67 (31%)
Frame = +1
Query: 730 PPPPPGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGXRXSXPXXGGXXGFPXNSGGYPRTK 909
PP PPG F P P GP G P G G P + G PR
Sbjct: 184 PPAPPGPDPHSLFPPQCPCEAPPGDGGPPGQPGPDGPPGAPGNAGEDGKPGDQG--PRGP 241
Query: 910 XFXPXXP 930
P P
Sbjct: 242 PGIPGAP 248
>M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein.
Length = 326
Score = 31.9 bits (69), Expect = 0.70
Identities = 20/67 (29%), Positives = 21/67 (31%)
Frame = +1
Query: 730 PPPPPGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGXRXSXPXXGGXXGFPXNSGGYPRTK 909
PP PPG F P P GP G P G G P + G PR
Sbjct: 165 PPAPPGPDPHSLFPPQCPCEAPPGDGGPPGQPGPDGPPGAPGNAGEDGKPGDQG--PRGP 222
Query: 910 XFXPXXP 930
P P
Sbjct: 223 PGIPGAP 229
>Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical
protein F47B8.13 protein.
Length = 245
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/45 (31%), Positives = 16/45 (35%)
Frame = +1
Query: 730 PPPPPGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGXRXSXPXXGG 864
PPPPP + P P P P GG + P GG
Sbjct: 39 PPPPPADAAPAPAPEPAPAPAPEAVPAPAADAGGYAAAAAPAGGG 83
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 3/83 (3%)
Frame = +1
Query: 676 FPXSRGXGGXGFSXXXXNPPPP---PGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGXRXS 846
+P +G G PP PG G + P G G R
Sbjct: 1197 YPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLSGMPGHGGDQGFQGAAGRTG 1256
Query: 847 XPXXGGXXGFPXNSGGYPRTKXF 915
P G G+P + GG+ ++ F
Sbjct: 1257 NPGLPGTPGYPGSPGGWAPSRGF 1279
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 3/83 (3%)
Frame = +1
Query: 676 FPXSRGXGGXGFSXXXXNPPPP---PGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGXRXS 846
+P +G G PP PG G + P G G R
Sbjct: 1454 YPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLSGMPGHGGDQGFQGAAGRTG 1513
Query: 847 XPXXGGXXGFPXNSGGYPRTKXF 915
P G G+P + GG+ ++ F
Sbjct: 1514 NPGLPGTPGYPGSPGGWAPSRGF 1536
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 3/83 (3%)
Frame = +1
Query: 676 FPXSRGXGGXGFSXXXXNPPPP---PGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGXRXS 846
+P +G G PP PG G + P G G R
Sbjct: 1453 YPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLSGMPGHGGDQGFQGAAGRTG 1512
Query: 847 XPXXGGXXGFPXNSGGYPRTKXF 915
P G G+P + GG+ ++ F
Sbjct: 1513 NPGLPGTPGYPGSPGGWAPSRGF 1535
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 29.5 bits (63), Expect = 3.7
Identities = 22/81 (27%), Positives = 23/81 (28%)
Frame = -2
Query: 890 PEFXGKPXXPPLXGXEXRXPPPXXXXGPXXXLXXGXGXGGXKXKXPXSPGGGGGXXXXXE 711
P G P PP E PPP P G G + P P G G
Sbjct: 124 PGAPGHPGKPPQSPCEPLTPPPCPACPPGPPGAPG-APGKPGSEGPPGPPGHDGPNGGPG 182
Query: 710 NPFPPXPRDXGKXKRKPXXGG 648
P P P KP G
Sbjct: 183 QPGQPGPHGPNGHPGKPGSQG 203
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/58 (29%), Positives = 19/58 (32%)
Frame = +1
Query: 730 PPPPPGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGXRXSXPXXGGXXGFPXNSGGYPR 903
PP PPG G P P GP G + P G G P G P+
Sbjct: 223 PPGPPGPPGAPGNDGPPGPPGPKGAPGPDGPPGADGQSGPPGPPGPAGTPGEKGICPK 280
>U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protein
174 protein.
Length = 314
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/54 (31%), Positives = 18/54 (33%)
Frame = +1
Query: 730 PPPPPGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGXRXSXPXXGGXXGFPXNSG 891
PP PPG G P P GP GG G G P N+G
Sbjct: 171 PPGPPGPAGSAGVKGPSGNPGAPGTDGPAGNKGGQGPPGNAGAPGANGNPGNAG 224
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/58 (29%), Positives = 19/58 (32%)
Frame = +1
Query: 730 PPPPPGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGXRXSXPXXGGXXGFPXNSGGYPR 903
PP PPG G P P GP G + P G G P G P+
Sbjct: 223 PPGPPGPPGAPGNDGPPGPPGPKGAPGPDGPPGADGQSGPPGPPGPAGTPGEKGICPK 280
>U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical
protein F41F3.3 protein.
Length = 156
Score = 24.6 bits (51), Expect(2) = 6.4
Identities = 17/69 (24%), Positives = 17/69 (24%)
Frame = +1
Query: 730 PPPPPGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGXRXSXPXXGGXXGFPXNSGGYPRTK 909
PP P G P P GG P GG G P G Y
Sbjct: 69 PPAPACGGGCGGGVAPAPIGGGYAQAPQAPIGGGYAAPQAPIGGGYGGAPIGGGSYAGAG 128
Query: 910 XFXPXXPXG 936
P G
Sbjct: 129 PIGGGAPIG 137
Score = 22.6 bits (46), Expect(2) = 6.4
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +1
Query: 673 FFPXSRGXGGXGFSXXXXNPPPPPGEXG 756
F S G GG G + PPPPP G
Sbjct: 17 FLLPSGGGGGCGCAP----PPPPPSPCG 40
>U41993-8|AAA83449.1| 497|Caenorhabditis elegans Temporarily
assigned gene nameprotein 153, isoform a protein.
Length = 497
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 178 SVSAAPGNFFKDLEKMGQRVRERRSSARLQQST 276
S +AAP F L K+GQ++ ERR +R+ T
Sbjct: 12 SATAAPS--FMKLSKVGQKIPERRGGSRVSNPT 42
>U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily
assigned gene nameprotein 153, isoform b protein.
Length = 733
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 178 SVSAAPGNFFKDLEKMGQRVRERRSSARLQQST 276
S +AAP F L K+GQ++ ERR +R+ T
Sbjct: 248 SATAAPS--FMKLSKVGQKIPERRGGSRVSNPT 278
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Frame = -2
Query: 788 GXGXGGXKXKXPXSPGGGGGXXXXXENPFPPXP--RDXGKXKRK 663
G G G P PGGGGG P PP P + G+ RK
Sbjct: 617 GPGGPGGGGGPPRGPGGGGGGGPTGP-PAPPKPPAKPRGRPPRK 659
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Frame = -2
Query: 788 GXGXGGXKXKXPXSPGGGGGXXXXXENPFPPXP--RDXGKXKRK 663
G G G P PGGGGG P PP P + G+ RK
Sbjct: 617 GPGGPGGGGGPPRGPGGGGGGGPTGP-PAPPKPPAKPRGRPPRK 659
>Z81592-1|CAB04725.1| 695|Caenorhabditis elegans Hypothetical
protein T16G1.1 protein.
Length = 695
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/47 (29%), Positives = 16/47 (34%)
Frame = -2
Query: 788 GXGXGGXKXKXPXSPGGGGGXXXXXENPFPPXPRDXGKXKRKPXXGG 648
G G + P S G G P PP PR G + GG
Sbjct: 509 GNNNGNGRPMKPPSSSGSGSNRRSGPPPPPPPPRSSGANGNRNGGGG 555
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/58 (29%), Positives = 19/58 (32%)
Frame = +1
Query: 730 PPPPPGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGXRXSXPXXGGXXGFPXNSGGYPR 903
PP PPG G P P GP G + P G G P G P+
Sbjct: 228 PPGPPGPPGAPGNDGPPGPPGPKGAPGPDGPPGVDGQSGPPGPPGPAGTPGEKGICPK 285
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/71 (26%), Positives = 21/71 (29%)
Frame = +1
Query: 679 PXSRGXGGXGFSXXXXNPPPPPGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGXRXSXPXX 858
P G GG G P P G G P GP G + P
Sbjct: 180 PGGPGEGGDGGRPGNPGRPGPAGPRGEPGTEYKPGQPGRPGPPGPRGEAGPAGQPGSPGN 239
Query: 859 GGXXGFPXNSG 891
G G P N+G
Sbjct: 240 DGESGKPGNAG 250
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 8.7
Identities = 24/86 (27%), Positives = 25/86 (29%), Gaps = 2/86 (2%)
Frame = +1
Query: 649 PPXLGFLXFFPXSRGXGGXGFSXXXXNPPPPPGEXGXXFFXPPXPFPXXXK--XXGPXXX 822
PP P + G PPPPPG PP P P GP
Sbjct: 686 PPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPP 745
Query: 823 XGGGXRXSXPXXGGXXGFPXNSGGYP 900
G P GG P GG P
Sbjct: 746 PPPG--GLPPISGGPPPPPPPPGGCP 769
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 8.7
Identities = 24/86 (27%), Positives = 25/86 (29%), Gaps = 2/86 (2%)
Frame = +1
Query: 649 PPXLGFLXFFPXSRGXGGXGFSXXXXNPPPPPGEXGXXFFXPPXPFPXXXK--XXGPXXX 822
PP P + G PPPPPG PP P P GP
Sbjct: 686 PPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPP 745
Query: 823 XGGGXRXSXPXXGGXXGFPXNSGGYP 900
G P GG P GG P
Sbjct: 746 PPPG--GLPPISGGPPPPPPPPGGCP 769
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 8.7
Identities = 24/86 (27%), Positives = 25/86 (29%), Gaps = 2/86 (2%)
Frame = +1
Query: 649 PPXLGFLXFFPXSRGXGGXGFSXXXXNPPPPPGEXGXXFFXPPXPFPXXXK--XXGPXXX 822
PP P + G PPPPPG PP P P GP
Sbjct: 269 PPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPP 328
Query: 823 XGGGXRXSXPXXGGXXGFPXNSGGYP 900
G P GG P GG P
Sbjct: 329 PPPG--GLPPISGGPPPPPPPPGGCP 352
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/70 (28%), Positives = 21/70 (30%)
Frame = -2
Query: 899 GYPPEFXGKPXXPPLXGXEXRXPPPXXXXGPXXXLXXGXGXGGXKXKXPXSPGGGGGXXX 720
G PP PPL G PPP P G P P GG
Sbjct: 235 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRT--GSPPPPPTGSPPPPPAGGSPPPP 292
Query: 719 XXENPFPPXP 690
+P PP P
Sbjct: 293 RAGSPPPPPP 302
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/70 (28%), Positives = 21/70 (30%)
Frame = -2
Query: 899 GYPPEFXGKPXXPPLXGXEXRXPPPXXXXGPXXXLXXGXGXGGXKXKXPXSPGGGGGXXX 720
G PP PPL G PPP P G P P GG
Sbjct: 256 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRT--GSPPPPPTGSPPPPPAGGSPPPP 313
Query: 719 XXENPFPPXP 690
+P PP P
Sbjct: 314 RAGSPPPPPP 323
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/70 (28%), Positives = 21/70 (30%)
Frame = -2
Query: 899 GYPPEFXGKPXXPPLXGXEXRXPPPXXXXGPXXXLXXGXGXGGXKXKXPXSPGGGGGXXX 720
G PP PPL G PPP P G P P GG
Sbjct: 241 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRT--GSPPPPPTGSPPPPPAGGSPPPP 298
Query: 719 XXENPFPPXP 690
+P PP P
Sbjct: 299 RAGSPPPPPP 308
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,918,882
Number of Sequences: 27780
Number of extensions: 324985
Number of successful extensions: 1392
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2500474882
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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