BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_H10 (966 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family... 29 4.6 At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 28 8.1 At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 28 8.1 At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 28 8.1 At1g29380.1 68414.m03592 hypothetical protein 28 8.1 >At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains, INTERPRO:IPR002965 Length = 162 Score = 29.1 bits (62), Expect = 4.6 Identities = 21/70 (30%), Positives = 24/70 (34%), Gaps = 3/70 (4%) Frame = +1 Query: 730 PPPPPGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGXRXSXPXXGGXXGF---PXNSGGYP 900 PP PP G + P P GGG + P GG G+ P SG YP Sbjct: 68 PPSPPSSGGGSSYYYP-----------PPSQSGGGSKYPPPYGGGGQGYYYPPPYSGNYP 116 Query: 901 RTKXFXPXXP 930 P P Sbjct: 117 TPPPPNPIVP 126 >At5g54650.2 68418.m06805 formin homology 2 domain-containing protein / FH2 domain-containing protein contains formin homology 2 domain, Pfam:PF02181 Length = 900 Score = 28.3 bits (60), Expect = 8.1 Identities = 12/29 (41%), Positives = 13/29 (44%) Frame = -2 Query: 893 PPEFXGKPXXPPLXGXEXRXPPPXXXXGP 807 PP G P PP G + PPP GP Sbjct: 393 PPPGSGGPKPPPPPGPKGPRPPPPMSLGP 421 >At5g54650.1 68418.m06804 formin homology 2 domain-containing protein / FH2 domain-containing protein contains formin homology 2 domain, Pfam:PF02181 Length = 900 Score = 28.3 bits (60), Expect = 8.1 Identities = 12/29 (41%), Positives = 13/29 (44%) Frame = -2 Query: 893 PPEFXGKPXXPPLXGXEXRXPPPXXXXGP 807 PP G P PP G + PPP GP Sbjct: 393 PPPGSGGPKPPPPPGPKGPRPPPPMSLGP 421 >At1g59910.1 68414.m06749 formin homology 2 domain-containing protein / FH2 domain-containing protein contains formin homology 2 domain, Pfam:PF02128 Length = 929 Score = 28.3 bits (60), Expect = 8.1 Identities = 18/54 (33%), Positives = 20/54 (37%) Frame = +1 Query: 730 PPPPPGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGXRXSXPXXGGXXGFPXNSG 891 PPPPP + G PP P P K GP + G G P SG Sbjct: 396 PPPPPPKKGPA--APPPPPPPGKKGAGPPPPPPMSKKGPPKPPGNPKG-PTKSG 446 >At1g29380.1 68414.m03592 hypothetical protein Length = 228 Score = 28.3 bits (60), Expect = 8.1 Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 1/46 (2%) Frame = -2 Query: 863 PPLXGXEXRXP-PPXXXXGPXXXLXXGXGXGGXKXKXPXSPGGGGG 729 PPL G PP P G G GG P GGGGG Sbjct: 75 PPLDGTTPTGGYPPLYGTTPPGGGDVGGGGGGYGGGTPGGGGGGGG 120 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,100,420 Number of Sequences: 28952 Number of extensions: 292421 Number of successful extensions: 949 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 679 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 897 length of database: 12,070,560 effective HSP length: 81 effective length of database: 9,725,448 effective search space used: 2334107520 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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