Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H10
         (966 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family...    29   4.6  
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro...    28   8.1  
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro...    28   8.1  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    28   8.1  
At1g29380.1 68414.m03592 hypothetical protein                          28   8.1  

>At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 162

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 21/70 (30%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
 Frame = +1

Query: 730 PPPPPGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGXRXSXPXXGGXXGF---PXNSGGYP 900
           PP PP   G   +  P           P    GGG +   P  GG  G+   P  SG YP
Sbjct: 68  PPSPPSSGGGSSYYYP-----------PPSQSGGGSKYPPPYGGGGQGYYYPPPYSGNYP 116

Query: 901 RTKXFXPXXP 930
                 P  P
Sbjct: 117 TPPPPNPIVP 126


>At5g54650.2 68418.m06805 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 900

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -2

Query: 893 PPEFXGKPXXPPLXGXEXRXPPPXXXXGP 807
           PP   G P  PP  G +   PPP    GP
Sbjct: 393 PPPGSGGPKPPPPPGPKGPRPPPPMSLGP 421


>At5g54650.1 68418.m06804 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 900

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -2

Query: 893 PPEFXGKPXXPPLXGXEXRXPPPXXXXGP 807
           PP   G P  PP  G +   PPP    GP
Sbjct: 393 PPPGSGGPKPPPPPGPKGPRPPPPMSLGP 421


>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 18/54 (33%), Positives = 20/54 (37%)
 Frame = +1

Query: 730 PPPPPGEXGXXFFXPPXPFPXXXKXXGPXXXXGGGXRXSXPXXGGXXGFPXNSG 891
           PPPPP + G     PP P P   K  GP        +      G   G P  SG
Sbjct: 396 PPPPPPKKGPA--APPPPPPPGKKGAGPPPPPPMSKKGPPKPPGNPKG-PTKSG 446


>At1g29380.1 68414.m03592 hypothetical protein
          Length = 228

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
 Frame = -2

Query: 863 PPLXGXEXRXP-PPXXXXGPXXXLXXGXGXGGXKXKXPXSPGGGGG 729
           PPL G       PP     P      G G GG     P   GGGGG
Sbjct: 75  PPLDGTTPTGGYPPLYGTTPPGGGDVGGGGGGYGGGTPGGGGGGGG 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,100,420
Number of Sequences: 28952
Number of extensions: 292421
Number of successful extensions: 949
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2334107520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)