Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H09
         (1059 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    30   0.63 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.5  
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    27   4.5  

>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 29.9 bits (64), Expect = 0.63
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 63  PRPPRXLSYSQVVRRLFLEA*AFAKAPRXTE 155
           PR PR  + S+VV   F +  AF+KAP  TE
Sbjct: 282 PRAPRPSTASEVVSDYFEQNSAFSKAPENTE 312


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +2

Query: 614  NPXXXPXXSHQSLQPXXX--PDPXTPPLXXHPXXPTXVPLCALXSXSPPXPXP 766
            +P   P    QS  P     P P  PP+   P  P+  P+ A    +PP P P
Sbjct: 1685 HPVSTPPVRPQSAAPPQMSAPTPPPPPMSV-PPPPSAPPMPAGPPSAPPPPLP 1736


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 701 GGXXGAGXWGXGXGXVGGIGG 639
           GG  GAG  G G   +GG GG
Sbjct: 226 GGLGGAGLGGLGGAGLGGFGG 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,842,206
Number of Sequences: 5004
Number of extensions: 19518
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 557214894
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)