BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_H09 (1059 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 30 0.63 SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.5 SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 27 4.5 >SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 651 Score = 29.9 bits (64), Expect = 0.63 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = +3 Query: 63 PRPPRXLSYSQVVRRLFLEA*AFAKAPRXTE 155 PR PR + S+VV F + AF+KAP TE Sbjct: 282 PRAPRPSTASEVVSDYFEQNSAFSKAPENTE 312 >SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF hand and WH2 motif |Schizosaccharomyces pombe|chr 1|||Manual Length = 1794 Score = 27.9 bits (59), Expect = 2.5 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 2/53 (3%) Frame = +2 Query: 614 NPXXXPXXSHQSLQPXXX--PDPXTPPLXXHPXXPTXVPLCALXSXSPPXPXP 766 +P P QS P P P PP+ P P+ P+ A +PP P P Sbjct: 1685 HPVSTPPVRPQSAAPPQMSAPTPPPPPMSV-PPPPSAPPMPAGPPSAPPPPLP 1736 >SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces pombe|chr 1|||Manual Length = 354 Score = 27.1 bits (57), Expect = 4.5 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = -2 Query: 701 GGXXGAGXWGXGXGXVGGIGG 639 GG GAG G G +GG GG Sbjct: 226 GGLGGAGLGGLGGAGLGGFGG 246 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,842,206 Number of Sequences: 5004 Number of extensions: 19518 Number of successful extensions: 29 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 28 length of database: 2,362,478 effective HSP length: 73 effective length of database: 1,997,186 effective search space used: 557214894 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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