Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_H09
(1059 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37850| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.68
SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05) 31 2.1
SB_28064| Best HMM Match : DUF1174 (HMM E-Value=4.5) 30 2.7
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 30 3.6
SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_7446| Best HMM Match : SH2 (HMM E-Value=2.7e-22) 29 6.3
SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4) 29 6.3
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 29 6.3
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 29 6.3
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 29 6.3
SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37) 29 8.3
SB_26646| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.3
>SB_37850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 32.3 bits (70), Expect = 0.68
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -2
Query: 713 LXGXGGXXGAGXWGXGXGXVGGIGGNXXXXVKGSXLXGG 597
L G GG G G G G G +GG+GG G+ + GG
Sbjct: 232 LGGLGGVGGLGGVG-GLGGIGGLGGGGVIAGAGAGIGGG 269
>SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05)
Length = 267
Score = 30.7 bits (66), Expect = 2.1
Identities = 17/55 (30%), Positives = 20/55 (36%)
Frame = -2
Query: 707 GXGGXXGAGXWGXGXGXVGGIGGNXXXXVKGSXLXGGXXXXRTKXGASGNXRVAH 543
G GG G G G G G GG GG GG R + +S + H
Sbjct: 89 GGGGFGGGGGGGFGGGGGGGFGGGGGGGGGFGGGGGGGFGSRARPASSNSNACRH 143
>SB_28064| Best HMM Match : DUF1174 (HMM E-Value=4.5)
Length = 404
Score = 30.3 bits (65), Expect = 2.7
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -2
Query: 707 GXGGXXGAGXWGXGXGXVGGIGGNXXXXVKGSXLXGGXXXXRTKXGASGN 558
G G G G G G G+GGN G+ L G G GN
Sbjct: 182 GLAGTKGIGEHGTGLAGTKGMGGNKGIGEHGTGLGGNKGIGEYGTGLGGN 231
Score = 28.7 bits (61), Expect = 8.3
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Frame = -2
Query: 707 GXGGXXGAGXWGXGXGX---VG----GIGGNXXXXVKGSXLXGGXXXXRTKXGASGN 558
G GG G G +G G G +G G+GGN G+ L G G GN
Sbjct: 240 GLGGNKGIGEYGTGLGGNKGIGEYGTGLGGNKGIGEHGTGLGGNKGKGEYGTGLGGN 296
Score = 28.7 bits (61), Expect = 8.3
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Frame = -2
Query: 707 GXGGXXGAGXWGXGXGX---VG----GIGGNXXXXVKGSXLXGGXXXXRTKXGASGN 558
G GG G G +G G G +G G+GGN G+ L G G +GN
Sbjct: 253 GLGGNKGIGEYGTGLGGNKGIGEHGTGLGGNKGKGEYGTGLGGNKGKCEYGTGLAGN 309
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 30.3 bits (65), Expect = 2.7
Identities = 20/72 (27%), Positives = 26/72 (36%)
Frame = +2
Query: 599 HXPXXNPXXXPXXSHQSLQPXXXPDPXTPPLXXHPXXPTXVPLCALXSXSPPXPXPWXXI 778
+ P NP P + + P P+P PP P P P A PP P P I
Sbjct: 187 YPPPPNPPYPPPPNAPNPPP---PNPPYPPPPNAPNPPYPPPPNAPNPPYPPPPNPQFAI 243
Query: 779 SXLXRXXPXPPD 814
+ P P+
Sbjct: 244 ALCLGHGPRSPE 255
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 29.9 bits (64), Expect = 3.6
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -2
Query: 707 GXGGXXGAGXWGXGXGXVGGIGGNXXXXVKGS 612
G GG G G +G G G GG GG GS
Sbjct: 206 GYGGGRGGGGYGGGRGGGGGYGGGRRDYGGGS 237
>SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1880
Score = 29.1 bits (62), Expect = 6.3
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = -2
Query: 707 GXGGXXGAGXWGXGXGXVGGIGGNXXXXVKGSXLXGG 597
G G G G WG G GG GG +G GG
Sbjct: 152 GRGRGGGEGGWGGRGGNGGGRGGGEGGGGRGRGTGGG 188
>SB_7446| Best HMM Match : SH2 (HMM E-Value=2.7e-22)
Length = 699
Score = 29.1 bits (62), Expect = 6.3
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 668 PDPXTPPLXXHPXXPTXVPLCALXSXSPPXPXPW 769
P P PP+ HP + P + S PP P P+
Sbjct: 383 PLPTPPPMSTHPEFTSKPPPPPVASKPPPKPVPY 416
>SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4)
Length = 186
Score = 29.1 bits (62), Expect = 6.3
Identities = 18/49 (36%), Positives = 19/49 (38%)
Frame = -2
Query: 707 GXGGXXGAGXWGXGXGXVGGIGGNXXXXVKGSXLXGGXXXXRTKXGASG 561
G GG G G G G G GG GG G GG GA+G
Sbjct: 52 GGGGATGGGATGGGGGATGGGGGATGG--HGGATGGGGGATGDGGGATG 98
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 29.1 bits (62), Expect = 6.3
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -2
Query: 707 GXGGXXGAGXWGXGXGXVGGIGGNXXXXVKGSXLXGG 597
G GG G G +G G G GG GG G GG
Sbjct: 210 GYGGGRGGGGYGGGHGG-GGYGGGGRHDYGGGSKGGG 245
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 29.1 bits (62), Expect = 6.3
Identities = 16/52 (30%), Positives = 18/52 (34%)
Frame = +3
Query: 534 PRTMGNPPVTGXTXFGSXXLPPTXQXRTLXXXPXVPTNPSNXSXXXTPXPRP 689
P PP S +PP Q + P PT P TP PRP
Sbjct: 1066 PSEPAPPPRQPPPPSTSQPVPPPRQPDPIPTNPAHPTEPPPRQPKPTPAPRP 1117
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 29.1 bits (62), Expect = 6.3
Identities = 16/54 (29%), Positives = 18/54 (33%)
Frame = +2
Query: 605 PXXNPXXXPXXSHQSLQPXXXPDPXTPPLXXHPXXPTXVPLCALXSXSPPXPXP 766
P +P P S P P P PP P P P + PP P P
Sbjct: 374 PPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPP 427
Score = 28.7 bits (61), Expect = 8.3
Identities = 16/54 (29%), Positives = 16/54 (29%)
Frame = +2
Query: 605 PXXNPXXXPXXSHQSLQPXXXPDPXTPPLXXHPXXPTXVPLCALXSXSPPXPXP 766
P P P QP P P PP P P P PP P P
Sbjct: 378 PPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPP 431
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 29.1 bits (62), Expect = 6.3
Identities = 18/61 (29%), Positives = 21/61 (34%)
Frame = +2
Query: 638 SHQSLQPXXXPDPXTPPLXXHPXXPTXVPLCALXSXSPPXPXPWXXISXLXRXXPXPPDL 817
SH + P P PP P P P + PP P P L P PP +
Sbjct: 193 SHPT-SPSQITQPPPPPPRPPPSPPPPPPPPSPSPPRPPPPPPPSPPRPLAAKLPEPPPI 251
Query: 818 P 820
P
Sbjct: 252 P 252
>SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37)
Length = 1063
Score = 28.7 bits (61), Expect = 8.3
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -2
Query: 707 GXGGXXGAGXWGXGXGXVGGIGGNXXXXVKGSXLXGG 597
G GG G G G G G GG GG+ G GG
Sbjct: 780 GGGGDGGGGGGGGGGGGGGGGGGDGGGYGDGDGGGGG 816
Score = 28.7 bits (61), Expect = 8.3
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = -2
Query: 707 GXGGXXGAGXWGXGXGXVGGIGGNXXXXVKGSXLXGGXXXXRTKXGASGN 558
G GG G G G G G GG GG G GG G G+
Sbjct: 783 GDGGGGGGGGGGGGGGGGGGDGGGYGDGDGGGGGGGGGGGGGGDGGGYGD 832
>SB_26646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 28.7 bits (61), Expect = 8.3
Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = -2
Query: 707 GXGGXXGAGXWGXGXGXVGGIGGNXXXXVKGSXLXG-GXXXXRTKXGASGN 558
G G GAG G G G GG GG G G G GA GN
Sbjct: 48 GAGNGVGAGGCGCGGGNDGGNGGGGAGNGGGGGGAGNGGAAGAAGAGAGGN 98
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,227,822
Number of Sequences: 59808
Number of extensions: 181542
Number of successful extensions: 723
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3189638717
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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