BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_H09 (1059 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_37850| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.68 SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05) 31 2.1 SB_28064| Best HMM Match : DUF1174 (HMM E-Value=4.5) 30 2.7 SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7 SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 30 3.6 SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3 SB_7446| Best HMM Match : SH2 (HMM E-Value=2.7e-22) 29 6.3 SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4) 29 6.3 SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 29 6.3 SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3 SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 29 6.3 SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 29 6.3 SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37) 29 8.3 SB_26646| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.3 >SB_37850| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 509 Score = 32.3 bits (70), Expect = 0.68 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -2 Query: 713 LXGXGGXXGAGXWGXGXGXVGGIGGNXXXXVKGSXLXGG 597 L G GG G G G G G +GG+GG G+ + GG Sbjct: 232 LGGLGGVGGLGGVG-GLGGIGGLGGGGVIAGAGAGIGGG 269 >SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05) Length = 267 Score = 30.7 bits (66), Expect = 2.1 Identities = 17/55 (30%), Positives = 20/55 (36%) Frame = -2 Query: 707 GXGGXXGAGXWGXGXGXVGGIGGNXXXXVKGSXLXGGXXXXRTKXGASGNXRVAH 543 G GG G G G G G GG GG GG R + +S + H Sbjct: 89 GGGGFGGGGGGGFGGGGGGGFGGGGGGGGGFGGGGGGGFGSRARPASSNSNACRH 143 >SB_28064| Best HMM Match : DUF1174 (HMM E-Value=4.5) Length = 404 Score = 30.3 bits (65), Expect = 2.7 Identities = 16/50 (32%), Positives = 18/50 (36%) Frame = -2 Query: 707 GXGGXXGAGXWGXGXGXVGGIGGNXXXXVKGSXLXGGXXXXRTKXGASGN 558 G G G G G G G+GGN G+ L G G GN Sbjct: 182 GLAGTKGIGEHGTGLAGTKGMGGNKGIGEHGTGLGGNKGIGEYGTGLGGN 231 Score = 28.7 bits (61), Expect = 8.3 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 7/57 (12%) Frame = -2 Query: 707 GXGGXXGAGXWGXGXGX---VG----GIGGNXXXXVKGSXLXGGXXXXRTKXGASGN 558 G GG G G +G G G +G G+GGN G+ L G G GN Sbjct: 240 GLGGNKGIGEYGTGLGGNKGIGEYGTGLGGNKGIGEHGTGLGGNKGKGEYGTGLGGN 296 Score = 28.7 bits (61), Expect = 8.3 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 7/57 (12%) Frame = -2 Query: 707 GXGGXXGAGXWGXGXGX---VG----GIGGNXXXXVKGSXLXGGXXXXRTKXGASGN 558 G GG G G +G G G +G G+GGN G+ L G G +GN Sbjct: 253 GLGGNKGIGEYGTGLGGNKGIGEHGTGLGGNKGKGEYGTGLGGNKGKCEYGTGLAGN 309 >SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 290 Score = 30.3 bits (65), Expect = 2.7 Identities = 20/72 (27%), Positives = 26/72 (36%) Frame = +2 Query: 599 HXPXXNPXXXPXXSHQSLQPXXXPDPXTPPLXXHPXXPTXVPLCALXSXSPPXPXPWXXI 778 + P NP P + + P P+P PP P P P A PP P P I Sbjct: 187 YPPPPNPPYPPPPNAPNPPP---PNPPYPPPPNAPNPPYPPPPNAPNPPYPPPPNPQFAI 243 Query: 779 SXLXRXXPXPPD 814 + P P+ Sbjct: 244 ALCLGHGPRSPE 255 >SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) Length = 248 Score = 29.9 bits (64), Expect = 3.6 Identities = 14/32 (43%), Positives = 15/32 (46%) Frame = -2 Query: 707 GXGGXXGAGXWGXGXGXVGGIGGNXXXXVKGS 612 G GG G G +G G G GG GG GS Sbjct: 206 GYGGGRGGGGYGGGRGGGGGYGGGRRDYGGGS 237 >SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1880 Score = 29.1 bits (62), Expect = 6.3 Identities = 14/37 (37%), Positives = 15/37 (40%) Frame = -2 Query: 707 GXGGXXGAGXWGXGXGXVGGIGGNXXXXVKGSXLXGG 597 G G G G WG G GG GG +G GG Sbjct: 152 GRGRGGGEGGWGGRGGNGGGRGGGEGGGGRGRGTGGG 188 >SB_7446| Best HMM Match : SH2 (HMM E-Value=2.7e-22) Length = 699 Score = 29.1 bits (62), Expect = 6.3 Identities = 12/34 (35%), Positives = 16/34 (47%) Frame = +2 Query: 668 PDPXTPPLXXHPXXPTXVPLCALXSXSPPXPXPW 769 P P PP+ HP + P + S PP P P+ Sbjct: 383 PLPTPPPMSTHPEFTSKPPPPPVASKPPPKPVPY 416 >SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4) Length = 186 Score = 29.1 bits (62), Expect = 6.3 Identities = 18/49 (36%), Positives = 19/49 (38%) Frame = -2 Query: 707 GXGGXXGAGXWGXGXGXVGGIGGNXXXXVKGSXLXGGXXXXRTKXGASG 561 G GG G G G G G GG GG G GG GA+G Sbjct: 52 GGGGATGGGATGGGGGATGGGGGATGG--HGGATGGGGGATGDGGGATG 98 >SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) Length = 252 Score = 29.1 bits (62), Expect = 6.3 Identities = 15/37 (40%), Positives = 16/37 (43%) Frame = -2 Query: 707 GXGGXXGAGXWGXGXGXVGGIGGNXXXXVKGSXLXGG 597 G GG G G +G G G GG GG G GG Sbjct: 210 GYGGGRGGGGYGGGHGG-GGYGGGGRHDYGGGSKGGG 245 >SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1212 Score = 29.1 bits (62), Expect = 6.3 Identities = 16/52 (30%), Positives = 18/52 (34%) Frame = +3 Query: 534 PRTMGNPPVTGXTXFGSXXLPPTXQXRTLXXXPXVPTNPSNXSXXXTPXPRP 689 P PP S +PP Q + P PT P TP PRP Sbjct: 1066 PSEPAPPPRQPPPPSTSQPVPPPRQPDPIPTNPAHPTEPPPRQPKPTPAPRP 1117 >SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) Length = 457 Score = 29.1 bits (62), Expect = 6.3 Identities = 16/54 (29%), Positives = 18/54 (33%) Frame = +2 Query: 605 PXXNPXXXPXXSHQSLQPXXXPDPXTPPLXXHPXXPTXVPLCALXSXSPPXPXP 766 P +P P S P P P PP P P P + PP P P Sbjct: 374 PPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPP 427 Score = 28.7 bits (61), Expect = 8.3 Identities = 16/54 (29%), Positives = 16/54 (29%) Frame = +2 Query: 605 PXXNPXXXPXXSHQSLQPXXXPDPXTPPLXXHPXXPTXVPLCALXSXSPPXPXP 766 P P P QP P P PP P P P PP P P Sbjct: 378 PPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPP 431 >SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) Length = 867 Score = 29.1 bits (62), Expect = 6.3 Identities = 18/61 (29%), Positives = 21/61 (34%) Frame = +2 Query: 638 SHQSLQPXXXPDPXTPPLXXHPXXPTXVPLCALXSXSPPXPXPWXXISXLXRXXPXPPDL 817 SH + P P PP P P P + PP P P L P PP + Sbjct: 193 SHPT-SPSQITQPPPPPPRPPPSPPPPPPPPSPSPPRPPPPPPPSPPRPLAAKLPEPPPI 251 Query: 818 P 820 P Sbjct: 252 P 252 >SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37) Length = 1063 Score = 28.7 bits (61), Expect = 8.3 Identities = 15/37 (40%), Positives = 16/37 (43%) Frame = -2 Query: 707 GXGGXXGAGXWGXGXGXVGGIGGNXXXXVKGSXLXGG 597 G GG G G G G G GG GG+ G GG Sbjct: 780 GGGGDGGGGGGGGGGGGGGGGGGDGGGYGDGDGGGGG 816 Score = 28.7 bits (61), Expect = 8.3 Identities = 17/50 (34%), Positives = 18/50 (36%) Frame = -2 Query: 707 GXGGXXGAGXWGXGXGXVGGIGGNXXXXVKGSXLXGGXXXXRTKXGASGN 558 G GG G G G G G GG GG G GG G G+ Sbjct: 783 GDGGGGGGGGGGGGGGGGGGDGGGYGDGDGGGGGGGGGGGGGGDGGGYGD 832 >SB_26646| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 152 Score = 28.7 bits (61), Expect = 8.3 Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 1/51 (1%) Frame = -2 Query: 707 GXGGXXGAGXWGXGXGXVGGIGGNXXXXVKGSXLXG-GXXXXRTKXGASGN 558 G G GAG G G G GG GG G G G GA GN Sbjct: 48 GAGNGVGAGGCGCGGGNDGGNGGGGAGNGGGGGGAGNGGAAGAAGAGAGGN 98 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,227,822 Number of Sequences: 59808 Number of extensions: 181542 Number of successful extensions: 723 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 363 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 593 length of database: 16,821,457 effective HSP length: 83 effective length of database: 11,857,393 effective search space used: 3189638717 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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