BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_H08 (843 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 81 3e-16 SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 81 3e-16 SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 27 2.5 SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 26 5.8 SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 7.7 >SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccharomyces pombe|chr 1|||Manual Length = 200 Score = 80.6 bits (190), Expect = 3e-16 Identities = 37/50 (74%), Positives = 42/50 (84%) Frame = +2 Query: 242 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 391 R RGGN K+RALRLD+GNFSWGSE ++KTRII V Y+ SNNELVRT TL Sbjct: 47 RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTL 96 Score = 48.4 bits (110), Expect = 1e-06 Identities = 22/37 (59%), Positives = 29/37 (78%) Frame = +1 Query: 124 HQRRATGGQRCAQFRKQRXSALGRPAANTRLGPQRIH 234 H+R ATG +R AQ+RK+R LGR +NTR+GP+RIH Sbjct: 9 HKRSATGAKR-AQYRKKRKFELGRQPSNTRIGPKRIH 44 Score = 42.3 bits (95), Expect = 8e-05 Identities = 18/34 (52%), Positives = 25/34 (73%) Frame = +1 Query: 394 SRNAIVVVDATPFRQWYESHYTLPLGRKKGAKLT 495 +++AIV +DA PFR WYE+HY + +G KG K T Sbjct: 97 TKSAIVQIDAAPFRVWYETHYGILMG-SKGKKAT 129 >SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosaccharomyces pombe|chr 1|||Manual Length = 200 Score = 80.6 bits (190), Expect = 3e-16 Identities = 37/50 (74%), Positives = 42/50 (84%) Frame = +2 Query: 242 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 391 R RGGN K+RALRLD+GNFSWGSE ++KTRII V Y+ SNNELVRT TL Sbjct: 47 RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTL 96 Score = 48.4 bits (110), Expect = 1e-06 Identities = 22/37 (59%), Positives = 29/37 (78%) Frame = +1 Query: 124 HQRRATGGQRCAQFRKQRXSALGRPAANTRLGPQRIH 234 H+R ATG +R AQ+RK+R LGR +NTR+GP+RIH Sbjct: 9 HKRSATGAKR-AQYRKKRKFELGRQPSNTRIGPKRIH 44 Score = 42.3 bits (95), Expect = 8e-05 Identities = 18/34 (52%), Positives = 25/34 (73%) Frame = +1 Query: 394 SRNAIVVVDATPFRQWYESHYTLPLGRKKGAKLT 495 +++AIV +DA PFR WYE+HY + +G KG K T Sbjct: 97 TKSAIVQIDAAPFRVWYETHYGILMG-SKGKKAT 129 >SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 1026 Score = 27.5 bits (58), Expect = 2.5 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +3 Query: 324 AKPVSLMLCIMHLTMNWCVQRPLVKKCNCCSRCNS 428 +KPVSL + +T NW + V CN C N+ Sbjct: 295 SKPVSLCVYPEKITFNWLTE-GTVDSCNLCKLSNT 328 >SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr 2|||Manual Length = 541 Score = 26.2 bits (55), Expect = 5.8 Identities = 10/27 (37%), Positives = 12/27 (44%) Frame = +3 Query: 6 FPFRXPXFGAFLXXLFCLPYVLWXSXF 86 FPF P FG + C Y+ W F Sbjct: 232 FPFLGPIFGPIIGDFICQSYLGWCWVF 258 >SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 273 Score = 25.8 bits (54), Expect = 7.7 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = +2 Query: 74 VFXFXPHSXGSFVGLXGISAGPPVG 148 +F H+ G F G G S GPP G Sbjct: 179 LFHHRGHNGGGFGGFGGGSGGPPPG 203 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,316,181 Number of Sequences: 5004 Number of extensions: 42395 Number of successful extensions: 98 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 93 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 98 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 416455520 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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