Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H08
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...    81   3e-16
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...    81   3e-16
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    27   2.5  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   5.8  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.7  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 80.6 bits (190), Expect = 3e-16
 Identities = 37/50 (74%), Positives = 42/50 (84%)
 Frame = +2

Query: 242 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 391
           R RGGN K+RALRLD+GNFSWGSE  ++KTRII V Y+ SNNELVRT TL
Sbjct: 47  RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTL 96



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 22/37 (59%), Positives = 29/37 (78%)
 Frame = +1

Query: 124 HQRRATGGQRCAQFRKQRXSALGRPAANTRLGPQRIH 234
           H+R ATG +R AQ+RK+R   LGR  +NTR+GP+RIH
Sbjct: 9   HKRSATGAKR-AQYRKKRKFELGRQPSNTRIGPKRIH 44



 Score = 42.3 bits (95), Expect = 8e-05
 Identities = 18/34 (52%), Positives = 25/34 (73%)
 Frame = +1

Query: 394 SRNAIVVVDATPFRQWYESHYTLPLGRKKGAKLT 495
           +++AIV +DA PFR WYE+HY + +G  KG K T
Sbjct: 97  TKSAIVQIDAAPFRVWYETHYGILMG-SKGKKAT 129


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 80.6 bits (190), Expect = 3e-16
 Identities = 37/50 (74%), Positives = 42/50 (84%)
 Frame = +2

Query: 242 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 391
           R RGGN K+RALRLD+GNFSWGSE  ++KTRII V Y+ SNNELVRT TL
Sbjct: 47  RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTL 96



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 22/37 (59%), Positives = 29/37 (78%)
 Frame = +1

Query: 124 HQRRATGGQRCAQFRKQRXSALGRPAANTRLGPQRIH 234
           H+R ATG +R AQ+RK+R   LGR  +NTR+GP+RIH
Sbjct: 9   HKRSATGAKR-AQYRKKRKFELGRQPSNTRIGPKRIH 44



 Score = 42.3 bits (95), Expect = 8e-05
 Identities = 18/34 (52%), Positives = 25/34 (73%)
 Frame = +1

Query: 394 SRNAIVVVDATPFRQWYESHYTLPLGRKKGAKLT 495
           +++AIV +DA PFR WYE+HY + +G  KG K T
Sbjct: 97  TKSAIVQIDAAPFRVWYETHYGILMG-SKGKKAT 129


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 324 AKPVSLMLCIMHLTMNWCVQRPLVKKCNCCSRCNS 428
           +KPVSL +    +T NW  +   V  CN C   N+
Sbjct: 295 SKPVSLCVYPEKITFNWLTE-GTVDSCNLCKLSNT 328


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +3

Query: 6   FPFRXPXFGAFLXXLFCLPYVLWXSXF 86
           FPF  P FG  +    C  Y+ W   F
Sbjct: 232 FPFLGPIFGPIIGDFICQSYLGWCWVF 258


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 74  VFXFXPHSXGSFVGLXGISAGPPVG 148
           +F    H+ G F G  G S GPP G
Sbjct: 179 LFHHRGHNGGGFGGFGGGSGGPPPG 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,316,181
Number of Sequences: 5004
Number of extensions: 42395
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)