Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_H08
(843 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 93 3e-19
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 92 4e-19
02_01_0567 - 4168164-4168250,4168672-4168828,4168951-4169090,417... 31 0.87
01_02_0013 + 10162478-10163581 31 1.5
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 29 3.5
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 29 4.6
10_08_0459 + 18092656-18092724,18092827-18092886,18092970-180930... 28 8.1
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 92.7 bits (220), Expect = 3e-19
Identities = 42/50 (84%), Positives = 46/50 (92%)
Frame = +2
Query: 242 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 391
R RGGN K+RALRLDTGN+SWGSE TRKTRI+DVVYNASNNELVRT+TL
Sbjct: 48 RVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTL 97
Score = 44.8 bits (101), Expect = 9e-05
Identities = 18/30 (60%), Positives = 24/30 (80%)
Frame = +1
Query: 397 RNAIVVVDATPFRQWYESHYTLPLGRKKGA 486
++AIV VDA PF+QWY +HY + +GRKK A
Sbjct: 99 KSAIVQVDAAPFKQWYLTHYGVDIGRKKKA 128
Score = 36.7 bits (81), Expect = 0.023
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = +1
Query: 112 RAXWHQRRATGGQRCAQFRKQRXSALGRPAANTRLGPQR 228
R H+RRATGG++ A +RK+R LGR ANT+L +
Sbjct: 5 RDSMHKRRATGGKQKA-WRKKRKYELGRQPANTKLSSNK 42
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 92.3 bits (219), Expect = 4e-19
Identities = 42/50 (84%), Positives = 46/50 (92%)
Frame = +2
Query: 242 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 391
R RGGN K+RALRLDTGN+SWGSE TRKTRI+DVVYNASNNELVRT+TL
Sbjct: 48 RVRGGNLKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTL 97
Score = 44.8 bits (101), Expect = 9e-05
Identities = 18/30 (60%), Positives = 24/30 (80%)
Frame = +1
Query: 397 RNAIVVVDATPFRQWYESHYTLPLGRKKGA 486
++AIV VDA PF+QWY +HY + +GRKK A
Sbjct: 99 KSAIVQVDAAPFKQWYLTHYGVDIGRKKKA 128
Score = 36.7 bits (81), Expect = 0.023
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = +1
Query: 112 RAXWHQRRATGGQRCAQFRKQRXSALGRPAANTRLGPQR 228
R H+RRATGG++ A +RK+R LGR ANT+L +
Sbjct: 5 RDSMHKRRATGGKQKA-WRKKRKYELGRQPANTKLSSNK 42
>02_01_0567 -
4168164-4168250,4168672-4168828,4168951-4169090,
4170318-4170456,4170562-4170830,4170914-4171000,
4171259-4171327,4171427-4171455,4171544-4171950,
4172906-4172977,4173150-4173221,4173299-4173370,
4173454-4173519,4173717-4173785,4173866-4173995,
4174846-4174975
Length = 664
Score = 31.5 bits (68), Expect = 0.87
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 89 PHSXGSFVGLXGISAGPPVG-NVAPNSASSGSLR*GVPLQTPGSVLSVSTPXRS 247
P S GS L + G P ++AP+++ S + P QTP S S TP S
Sbjct: 192 PPSLGSLSSLTTLKDGNPFNTSIAPSASPSSTPTGSTPTQTPSSPSSSGTPSPS 245
>01_02_0013 + 10162478-10163581
Length = 367
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 255 EILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQRPLVKK 401
E +S RC P+ G R + A SL + ++HL +C RPL K
Sbjct: 240 EYMSPERCA--PMAMAGARVARAADVWSLGITVLHLYQGYCPARPLPSK 286
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 264 STVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQRPLVKKCN 407
+ + C+W + SLG R Q++K + L ++ + +N + L K N
Sbjct: 286 TVIPCMWLVIASLGRRLRQISKEAHISLAMLTVYLNDVLPSMLTVKAN 333
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 226 AEDRAWCLQRDALTQTXAACGIGRNVAHRWPCADAXEPDERPXXV 92
AED + L+R A T T A GR+ W D+ E+P V
Sbjct: 1062 AEDTSRQLRRTASTPTEKAVQDGRDAFREWKSVDSTSSREQPSDV 1106
>10_08_0459 +
18092656-18092724,18092827-18092886,18092970-18093038,
18093134-18093178,18093706-18094332,18094424-18094597,
18094688-18094991,18095070-18095161,18095253-18095319,
18095407-18095478,18095613-18095830,18095979-18096113,
18096225-18096520,18096603-18096774,18096860-18096958,
18097048-18097179,18097273-18097373,18097460-18097649,
18097713-18097751
Length = 986
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 432 EWSCIYYNNCIS*PRVFVRTNSLLDALYTTSMIRVLRVEHSD 307
+WS Y+ ++ + FV+TNSL LY +++ + VE D
Sbjct: 260 DWSKFIYDWSMNYMKKFVKTNSLGGCLYMWAVVYLDNVEFGD 301
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,278,951
Number of Sequences: 37544
Number of extensions: 320471
Number of successful extensions: 851
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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