Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H08
         (843 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)               91   1e-18
SB_10883| Best HMM Match : ig (HMM E-Value=7.00649e-43)                32   0.51 
SB_43084| Best HMM Match : ig (HMM E-Value=9.7e-23)                    32   0.67 
SB_28769| Best HMM Match : ig (HMM E-Value=1e-06)                      31   1.2  
SB_11731| Best HMM Match : ig (HMM E-Value=1e-06)                      31   1.2  
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           29   3.6  
SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37)                28   8.2  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 42/50 (84%), Positives = 44/50 (88%)
 Frame = +2

Query: 242 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 391
           R+RGGN K+RA RLDT NFSWGSE  TRK RIIDVVYNASNNELVRTKTL
Sbjct: 31  RTRGGNRKFRAFRLDTENFSWGSESCTRKARIIDVVYNASNNELVRTKTL 80



 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 27/45 (60%), Positives = 35/45 (77%)
 Frame = +1

Query: 397 RNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTXAXEAIINKKRS 531
           +N IV VD+TPFRQWYE+HY +P+GRKK  + T   + I+NKKRS
Sbjct: 82  KNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNKKRS 126



 Score = 31.9 bits (69), Expect = 0.67
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +1

Query: 166 RKQRXSALGRPAANTRLGPQRIH 234
           R +R   LGRP ANT++G +RIH
Sbjct: 6   RHKRKFELGRPPANTKIGTKRIH 28


>SB_10883| Best HMM Match : ig (HMM E-Value=7.00649e-43)
          Length = 1280

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +2

Query: 278 RLDTGNFSWG--SEC-STRKTRIIDVVYNASNNELVRTKTLG 394
           R D+GN++    S C +T KT  +DV+Y   N  LV   TLG
Sbjct: 508 RDDSGNYTCNVTSTCGTTMKTASLDVIYKPENTTLVSNSTLG 549



 Score = 32.3 bits (70), Expect = 0.51
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +2

Query: 278  RLDTGNFSWG--SEC-STRKTRIIDVVYNASNNELVRTKTLG 394
            R D+GN++    S C +T KT  +DV+Y   N  LV   TLG
Sbjct: 1206 RDDSGNYTCNVTSTCGTTMKTASLDVIYKPENTTLVSNSTLG 1247


>SB_43084| Best HMM Match : ig (HMM E-Value=9.7e-23)
          Length = 960

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +2

Query: 278 RLDTGNFSWG--SECSTR-KTRIIDVVYNASNNELVRTKTLG 394
           R D+GN++    S C T  KT  +DV+Y   N  LV   TLG
Sbjct: 348 RDDSGNYTCNVTSTCGTTIKTASLDVIYKPENTTLVSNSTLG 389


>SB_28769| Best HMM Match : ig (HMM E-Value=1e-06)
          Length = 213

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +2

Query: 284 DTGNFSWG--SEC-STRKTRIIDVVYNASNNELVRTKTLG 394
           D GN++    S C +T KT  +DV+Y   N  LV   TLG
Sbjct: 131 DRGNYTCNVTSTCGTTMKTASLDVIYKPENTTLVSNSTLG 170


>SB_11731| Best HMM Match : ig (HMM E-Value=1e-06)
          Length = 220

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +2

Query: 284 DTGNFSWG--SEC-STRKTRIIDVVYNASNNELVRTKTLG 394
           D GN++    S C +T KT  +DV+Y   N  LV   TLG
Sbjct: 148 DRGNYTCNVTSTCGTTMKTASLDVIYKPENTTLVSNSTLG 187


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/50 (26%), Positives = 30/50 (60%)
 Frame = +2

Query: 242 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 391
           ++ GG+TK +ALR++ G ++  S+    +  I+ V+++ +N E +    +
Sbjct: 44  KAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANKEHIERNVI 93


>SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3824

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 236  PXRSRGGNTKYRALRLDTGNFS 301
            P   +GGN +YR +  DTG FS
Sbjct: 1643 PDTGQGGNVEYRIVSPDTGKFS 1664


>SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37)
          Length = 732

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
 Frame = +2

Query: 101 GSFVGLXGISAGPPVGNVAPNSASSGSLR*GVPLQTPGS----VLSVST-PXRSRGGNTK 265
           G   G     + PP G + P+S+  G    G PL    S    + S ST P  S     K
Sbjct: 305 GGSSGFDAFGSSPPSGGIQPSSSQGGIF--GSPLSASNSFGPMISSSSTAPISSNPPEDK 362

Query: 266 YRAL-RLDT 289
           Y AL  LDT
Sbjct: 363 YSALSALDT 371


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,150,613
Number of Sequences: 59808
Number of extensions: 358879
Number of successful extensions: 744
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)