Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_H08
(843 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 109 9e-24
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 109 9e-24
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 109 9e-24
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 109 9e-24
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 81 4e-15
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 109 bits (263), Expect = 9e-24
Identities = 69/154 (44%), Positives = 90/154 (58%), Gaps = 9/154 (5%)
Frame = +1
Query: 112 RAXWHQRRATGGQRCAQFRKQRXSALGRPAANTRLGPQRIHSXSFTWWKY*VPCAASGHR 291
R WH+RR TGG+R + K+R LGRPAANT++GP+RIH+ V +R
Sbjct: 5 RDNWHKRRKTGGKR-KPYHKKRKYELGRPAANTKIGPRRIHTVR-------VRGGNKKYR 56
Query: 292 *LLLGIGMFNSQNPYH*CCV*---CI*Q*IGAYKDPWSR------NAIVVVDATPFRQWY 444
L L +G F+ + CC I A + R N IV++D+TP+RQWY
Sbjct: 57 ALRLDVGNFSWGSE---CCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWY 113
Query: 445 ESHYTLPLGRKKGAKLTXAXEAIINKKRSQRQQE 546
ESHY LPLGRKKGAKLT E I+NKKRS++ Q+
Sbjct: 114 ESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQK 147
Score = 99 bits (238), Expect = 1e-20
Identities = 46/50 (92%), Positives = 46/50 (92%)
Frame = +2
Query: 242 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 391
R RGGN KYRALRLD GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTL
Sbjct: 47 RVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTL 96
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 109 bits (263), Expect = 9e-24
Identities = 69/154 (44%), Positives = 90/154 (58%), Gaps = 9/154 (5%)
Frame = +1
Query: 112 RAXWHQRRATGGQRCAQFRKQRXSALGRPAANTRLGPQRIHSXSFTWWKY*VPCAASGHR 291
R WH+RR TGG+R + K+R LGRPAANT++GP+RIH+ V +R
Sbjct: 5 RDNWHKRRKTGGKR-KPYHKKRKYELGRPAANTKIGPRRIHTVR-------VRGGNKKYR 56
Query: 292 *LLLGIGMFNSQNPYH*CCV*---CI*Q*IGAYKDPWSR------NAIVVVDATPFRQWY 444
L L +G F+ + CC I A + R N IV++D+TP+RQWY
Sbjct: 57 ALRLDVGNFSWGSE---CCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWY 113
Query: 445 ESHYTLPLGRKKGAKLTXAXEAIINKKRSQRQQE 546
ESHY LPLGRKKGAKLT E I+NKKRS++ Q+
Sbjct: 114 ESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQK 147
Score = 99 bits (238), Expect = 1e-20
Identities = 46/50 (92%), Positives = 46/50 (92%)
Frame = +2
Query: 242 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 391
R RGGN KYRALRLD GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTL
Sbjct: 47 RVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTL 96
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 109 bits (263), Expect = 9e-24
Identities = 69/154 (44%), Positives = 90/154 (58%), Gaps = 9/154 (5%)
Frame = +1
Query: 112 RAXWHQRRATGGQRCAQFRKQRXSALGRPAANTRLGPQRIHSXSFTWWKY*VPCAASGHR 291
R WH+RR TGG+R + K+R LGRPAANT++GP+RIH+ V +R
Sbjct: 5 RDNWHKRRKTGGKR-KPYHKKRKYELGRPAANTKIGPRRIHTVR-------VRGGNKKYR 56
Query: 292 *LLLGIGMFNSQNPYH*CCV*---CI*Q*IGAYKDPWSR------NAIVVVDATPFRQWY 444
L L +G F+ + CC I A + R N IV++D+TP+RQWY
Sbjct: 57 ALRLDVGNFSWGSE---CCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWY 113
Query: 445 ESHYTLPLGRKKGAKLTXAXEAIINKKRSQRQQE 546
ESHY LPLGRKKGAKLT E I+NKKRS++ Q+
Sbjct: 114 ESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQK 147
Score = 99 bits (238), Expect = 1e-20
Identities = 46/50 (92%), Positives = 46/50 (92%)
Frame = +2
Query: 242 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 391
R RGGN KYRALRLD GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTL
Sbjct: 47 RVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTL 96
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 109 bits (263), Expect = 9e-24
Identities = 69/154 (44%), Positives = 90/154 (58%), Gaps = 9/154 (5%)
Frame = +1
Query: 112 RAXWHQRRATGGQRCAQFRKQRXSALGRPAANTRLGPQRIHSXSFTWWKY*VPCAASGHR 291
R WH+RR TGG+R + K+R LGRPAANT++GP+RIH+ V +R
Sbjct: 5 RDNWHKRRKTGGKR-KPYHKKRKYELGRPAANTKIGPRRIHTVR-------VRGGNKKYR 56
Query: 292 *LLLGIGMFNSQNPYH*CCV*---CI*Q*IGAYKDPWSR------NAIVVVDATPFRQWY 444
L L +G F+ + CC I A + R N IV++D+TP+RQWY
Sbjct: 57 ALRLDVGNFSWGSE---CCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWY 113
Query: 445 ESHYTLPLGRKKGAKLTXAXEAIINKKRSQRQQE 546
ESHY LPLGRKKGAKLT E I+NKKRS++ Q+
Sbjct: 114 ESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQK 147
Score = 99 bits (238), Expect = 1e-20
Identities = 46/50 (92%), Positives = 46/50 (92%)
Frame = +2
Query: 242 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 391
R RGGN KYRALRLD GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTL
Sbjct: 47 RVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTL 96
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 81.4 bits (192), Expect = 4e-15
Identities = 34/50 (68%), Positives = 43/50 (86%)
Frame = +1
Query: 397 RNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTXAXEAIINKKRSQRQQE 546
+N IV++D+TP+RQWYESHY LPLGRKKGAKLT E I+NKKRS++ Q+
Sbjct: 78 KNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQK 127
Score = 55.6 bits (128), Expect = 2e-07
Identities = 24/42 (57%), Positives = 32/42 (76%)
Frame = +1
Query: 112 RAXWHQRRATGGQRCAQFRKQRXSALGRPAANTRLGPQRIHS 237
R WH+RR TGG+R + K+R LGRPAANT++GP+RIH+
Sbjct: 5 RDNWHKRRKTGGKR-KPYHKKRKYELGRPAANTKIGPRRIHT 45
Score = 53.2 bits (122), Expect = 1e-06
Identities = 31/45 (68%), Positives = 32/45 (71%)
Frame = +2
Query: 257 NTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 391
NTK R+ T G C TRKTRIIDVVYNASNNELVRTKTL
Sbjct: 35 NTKIGPRRIHTVRVRGG--C-TRKTRIIDVVYNASNNELVRTKTL 76
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,636,973
Number of Sequences: 237096
Number of extensions: 1776669
Number of successful extensions: 3508
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3503
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10649685938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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