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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H08
         (843 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X67247-1|CAA47670.1|  208|Homo sapiens ribosomal protein S8 prot...   109   9e-24
BC070875-1|AAH70875.1|  208|Homo sapiens ribosomal protein S8 pr...   109   9e-24
AL592166-7|CAI13003.1|  208|Homo sapiens ribosomal protein S8 pr...   109   9e-24
AB062401-1|BAB93488.1|  208|Homo sapiens ribosomal protein S8 pr...   109   9e-24
AL592166-8|CAI13002.1|  188|Homo sapiens ribosomal protein S8 pr...    81   4e-15

>X67247-1|CAA47670.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  109 bits (263), Expect = 9e-24
 Identities = 69/154 (44%), Positives = 90/154 (58%), Gaps = 9/154 (5%)
 Frame = +1

Query: 112 RAXWHQRRATGGQRCAQFRKQRXSALGRPAANTRLGPQRIHSXSFTWWKY*VPCAASGHR 291
           R  WH+RR TGG+R   + K+R   LGRPAANT++GP+RIH+         V      +R
Sbjct: 5   RDNWHKRRKTGGKR-KPYHKKRKYELGRPAANTKIGPRRIHTVR-------VRGGNKKYR 56

Query: 292 *LLLGIGMFNSQNPYH*CCV*---CI*Q*IGAYKDPWSR------NAIVVVDATPFRQWY 444
            L L +G F+  +    CC      I     A  +   R      N IV++D+TP+RQWY
Sbjct: 57  ALRLDVGNFSWGSE---CCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWY 113

Query: 445 ESHYTLPLGRKKGAKLTXAXEAIINKKRSQRQQE 546
           ESHY LPLGRKKGAKLT   E I+NKKRS++ Q+
Sbjct: 114 ESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQK 147



 Score =   99 bits (238), Expect = 1e-20
 Identities = 46/50 (92%), Positives = 46/50 (92%)
 Frame = +2

Query: 242 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 391
           R RGGN KYRALRLD GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTL
Sbjct: 47  RVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTL 96


>BC070875-1|AAH70875.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  109 bits (263), Expect = 9e-24
 Identities = 69/154 (44%), Positives = 90/154 (58%), Gaps = 9/154 (5%)
 Frame = +1

Query: 112 RAXWHQRRATGGQRCAQFRKQRXSALGRPAANTRLGPQRIHSXSFTWWKY*VPCAASGHR 291
           R  WH+RR TGG+R   + K+R   LGRPAANT++GP+RIH+         V      +R
Sbjct: 5   RDNWHKRRKTGGKR-KPYHKKRKYELGRPAANTKIGPRRIHTVR-------VRGGNKKYR 56

Query: 292 *LLLGIGMFNSQNPYH*CCV*---CI*Q*IGAYKDPWSR------NAIVVVDATPFRQWY 444
            L L +G F+  +    CC      I     A  +   R      N IV++D+TP+RQWY
Sbjct: 57  ALRLDVGNFSWGSE---CCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWY 113

Query: 445 ESHYTLPLGRKKGAKLTXAXEAIINKKRSQRQQE 546
           ESHY LPLGRKKGAKLT   E I+NKKRS++ Q+
Sbjct: 114 ESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQK 147



 Score =   99 bits (238), Expect = 1e-20
 Identities = 46/50 (92%), Positives = 46/50 (92%)
 Frame = +2

Query: 242 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 391
           R RGGN KYRALRLD GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTL
Sbjct: 47  RVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTL 96


>AL592166-7|CAI13003.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  109 bits (263), Expect = 9e-24
 Identities = 69/154 (44%), Positives = 90/154 (58%), Gaps = 9/154 (5%)
 Frame = +1

Query: 112 RAXWHQRRATGGQRCAQFRKQRXSALGRPAANTRLGPQRIHSXSFTWWKY*VPCAASGHR 291
           R  WH+RR TGG+R   + K+R   LGRPAANT++GP+RIH+         V      +R
Sbjct: 5   RDNWHKRRKTGGKR-KPYHKKRKYELGRPAANTKIGPRRIHTVR-------VRGGNKKYR 56

Query: 292 *LLLGIGMFNSQNPYH*CCV*---CI*Q*IGAYKDPWSR------NAIVVVDATPFRQWY 444
            L L +G F+  +    CC      I     A  +   R      N IV++D+TP+RQWY
Sbjct: 57  ALRLDVGNFSWGSE---CCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWY 113

Query: 445 ESHYTLPLGRKKGAKLTXAXEAIINKKRSQRQQE 546
           ESHY LPLGRKKGAKLT   E I+NKKRS++ Q+
Sbjct: 114 ESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQK 147



 Score =   99 bits (238), Expect = 1e-20
 Identities = 46/50 (92%), Positives = 46/50 (92%)
 Frame = +2

Query: 242 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 391
           R RGGN KYRALRLD GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTL
Sbjct: 47  RVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTL 96


>AB062401-1|BAB93488.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  109 bits (263), Expect = 9e-24
 Identities = 69/154 (44%), Positives = 90/154 (58%), Gaps = 9/154 (5%)
 Frame = +1

Query: 112 RAXWHQRRATGGQRCAQFRKQRXSALGRPAANTRLGPQRIHSXSFTWWKY*VPCAASGHR 291
           R  WH+RR TGG+R   + K+R   LGRPAANT++GP+RIH+         V      +R
Sbjct: 5   RDNWHKRRKTGGKR-KPYHKKRKYELGRPAANTKIGPRRIHTVR-------VRGGNKKYR 56

Query: 292 *LLLGIGMFNSQNPYH*CCV*---CI*Q*IGAYKDPWSR------NAIVVVDATPFRQWY 444
            L L +G F+  +    CC      I     A  +   R      N IV++D+TP+RQWY
Sbjct: 57  ALRLDVGNFSWGSE---CCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWY 113

Query: 445 ESHYTLPLGRKKGAKLTXAXEAIINKKRSQRQQE 546
           ESHY LPLGRKKGAKLT   E I+NKKRS++ Q+
Sbjct: 114 ESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQK 147



 Score =   99 bits (238), Expect = 1e-20
 Identities = 46/50 (92%), Positives = 46/50 (92%)
 Frame = +2

Query: 242 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 391
           R RGGN KYRALRLD GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTL
Sbjct: 47  RVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTL 96


>AL592166-8|CAI13002.1|  188|Homo sapiens ribosomal protein S8
           protein.
          Length = 188

 Score = 81.4 bits (192), Expect = 4e-15
 Identities = 34/50 (68%), Positives = 43/50 (86%)
 Frame = +1

Query: 397 RNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTXAXEAIINKKRSQRQQE 546
           +N IV++D+TP+RQWYESHY LPLGRKKGAKLT   E I+NKKRS++ Q+
Sbjct: 78  KNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQK 127



 Score = 55.6 bits (128), Expect = 2e-07
 Identities = 24/42 (57%), Positives = 32/42 (76%)
 Frame = +1

Query: 112 RAXWHQRRATGGQRCAQFRKQRXSALGRPAANTRLGPQRIHS 237
           R  WH+RR TGG+R   + K+R   LGRPAANT++GP+RIH+
Sbjct: 5   RDNWHKRRKTGGKR-KPYHKKRKYELGRPAANTKIGPRRIHT 45



 Score = 53.2 bits (122), Expect = 1e-06
 Identities = 31/45 (68%), Positives = 32/45 (71%)
 Frame = +2

Query: 257 NTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 391
           NTK    R+ T     G  C TRKTRIIDVVYNASNNELVRTKTL
Sbjct: 35  NTKIGPRRIHTVRVRGG--C-TRKTRIIDVVYNASNNELVRTKTL 76


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,636,973
Number of Sequences: 237096
Number of extensions: 1776669
Number of successful extensions: 3508
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3503
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10649685938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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