Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H08
         (843 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal prote...    91   1e-18
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis...    31   0.78 
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis...    31   0.78 
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis...    31   0.78 
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis...    31   0.78 
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis...    31   0.78 
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res...    31   0.78 
L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin fam...    28   9.5  

>U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 8 protein.
          Length = 208

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 40/50 (80%), Positives = 46/50 (92%)
 Frame = +2

Query: 242 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 391
           R+RGGN KYRALRLD+GNFSW SE +TRKTRI+D +YNA+NNELVRTKTL
Sbjct: 47  RTRGGNEKYRALRLDSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTL 96



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 30/45 (66%), Positives = 35/45 (77%)
 Frame = +1

Query: 397 RNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTXAXEAIINKKRS 531
           + AI+ VDA PFRQWYE+HY LPL RKK AKL+    AI+NKKRS
Sbjct: 98  KGAIISVDAAPFRQWYEAHYALPLARKKNAKLSEEDNAILNKKRS 142


>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
           resistance related protein1 protein.
          Length = 1540

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 272 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 376
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform e protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 272 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 376
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform c protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 272 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 376
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform b protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 272 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 376
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform a protein.
          Length = 1528

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 272 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 376
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
           resistance-associatedprotein protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 272 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 376
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin family
           protein 1 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -1

Query: 375 TNSLLDALYTTSMIRVLRV 319
           TNSL+DA+YTT+ +  L++
Sbjct: 133 TNSLIDAMYTTNSVNDLKI 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,178,032
Number of Sequences: 27780
Number of extensions: 256075
Number of successful extensions: 642
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)