Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H08
         (843 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   106   2e-25
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   8.1  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   8.1  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   8.1  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  106 bits (255), Expect = 2e-25
 Identities = 67/150 (44%), Positives = 84/150 (56%), Gaps = 6/150 (4%)
 Frame = +1

Query: 112 RAXWHQRRATGGQRCAQFRKQRXSALGRPAANTRLGPQRIHSXSFTWWKY*VPCAASGHR 291
           R  WH+RRATGG+R    RK+R   LGRPAANT+LGPQRIH+                +R
Sbjct: 5   RDHWHKRRATGGKR-KPIRKKRKFELGRPAANTKLGPQRIHTVR-------TRGGNKKYR 56

Query: 292 *LLLGIGMFNSQNPYH*CCV*CI*Q*IGAYKDPWSRNAIVV------VDATPFRQWYESH 453
            L L  G F+  +         I     A  +   R   +V      +DATPFRQWYE H
Sbjct: 57  ALRLDTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGH 116

Query: 454 YTLPLGRKKGAKLTXAXEAIINKKRSQRQQ 543
           Y LPLGRK+GAKLT A E ++NKKRS++ +
Sbjct: 117 YVLPLGRKRGAKLTEAEEEVLNKKRSKKAE 146



 Score =  103 bits (248), Expect = 2e-24
 Identities = 47/50 (94%), Positives = 49/50 (98%)
 Frame = +2

Query: 242 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 391
           R+RGGN KYRALRLDTGNFSWGSEC+TRKTRIIDVVYNASNNELVRTKTL
Sbjct: 47  RTRGGNKKYRALRLDTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTL 96


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 447 LIPLPEWSCIYYNNC 403
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 447 LIPLPEWSCIYYNNC 403
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 447 LIPLPEWSCIYYNNC 403
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,647
Number of Sequences: 438
Number of extensions: 3047
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)