BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_H08 (843 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso... 95 5e-20 At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri... 92 4e-19 At5g41820.1 68418.m05092 geranylgeranyl transferase alpha subuni... 30 2.2 At2g46270.2 68415.m05754 G-box binding factor 3 (GBF3) identical... 29 2.9 At2g46270.1 68415.m05753 G-box binding factor 3 (GBF3) identical... 29 2.9 At2g39790.1 68415.m04885 mitochondrial glycoprotein family prote... 28 6.8 >At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal protein S8 - Zea mays, PIR:T04088 Length = 222 Score = 95.1 bits (226), Expect = 5e-20 Identities = 42/50 (84%), Positives = 47/50 (94%) Frame = +2 Query: 242 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 391 R RGGN K+RALRLDTGN+SWGSE +TRKTR++DVVYNASNNELVRTKTL Sbjct: 48 RVRGGNVKWRALRLDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTL 97 Score = 46.0 bits (104), Expect = 3e-05 Identities = 19/28 (67%), Positives = 23/28 (82%) Frame = +1 Query: 397 RNAIVVVDATPFRQWYESHYTLPLGRKK 480 ++AIV VDA PF+QWY SHY + LGRKK Sbjct: 99 KSAIVQVDAAPFKQWYLSHYGVELGRKK 126 Score = 36.7 bits (81), Expect = 0.019 Identities = 17/35 (48%), Positives = 25/35 (71%) Frame = +1 Query: 124 HQRRATGGQRCAQFRKQRXSALGRPAANTRLGPQR 228 H+RRATGG++ Q+RK+R +GR ANT+L + Sbjct: 9 HKRRATGGKQ-KQWRKKRKYEMGRQPANTKLSSNK 42 >At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ribosomal protein S8, Prunus armeniaca, EMBL:AF071889 Length = 210 Score = 92.3 bits (219), Expect = 4e-19 Identities = 42/50 (84%), Positives = 45/50 (90%) Frame = +2 Query: 242 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 391 R RGGN K+RALRLDTGNFSWGSE TRKTRI+DV YNASNNELVRT+TL Sbjct: 48 RVRGGNVKWRALRLDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTL 97 Score = 39.1 bits (87), Expect = 0.004 Identities = 20/50 (40%), Positives = 28/50 (56%) Frame = +1 Query: 397 RNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTXAXEAIINKKRSQRQQE 546 ++AIV VDA PF+Q Y HY + +GRKK + E + QR+ E Sbjct: 99 KSAIVQVDAAPFKQGYLQHYGVDIGRKKKGE-AVTTEEVKKSNHVQRKLE 147 Score = 35.5 bits (78), Expect = 0.044 Identities = 17/35 (48%), Positives = 24/35 (68%) Frame = +1 Query: 124 HQRRATGGQRCAQFRKQRXSALGRPAANTRLGPQR 228 H+RRATGG++ +RK+R LGR ANT+L + Sbjct: 9 HKRRATGGKQ-KMWRKKRKYELGRQPANTKLSSNK 42 >At5g41820.1 68418.m05092 geranylgeranyl transferase alpha subunit-related / RAB geranylgeranyltransferase alpha subunit-related low similarity to SP|Q08602 [Rattus norvegicus] Length = 687 Score = 29.9 bits (64), Expect = 2.2 Identities = 22/65 (33%), Positives = 32/65 (49%) Frame = -1 Query: 405 CIS*PRVFVRTNSLLDALYTTSMIRVLRVEHSDPQEKLPVSRRSARYLVFPPRERXGVDT 226 C++ +R+ S LD+L +RVL V H+ +LPV + RYL P G +T Sbjct: 572 CLNLSHNRIRSFSALDSLRHLKQLRVLDVSHNHICGELPVD--TTRYLCSSPLSNSG-ET 628 Query: 225 LRTEP 211 R P Sbjct: 629 GREVP 633 >At2g46270.2 68415.m05754 G-box binding factor 3 (GBF3) identical to G-box binding factor 3 (GBF3) SP:P42776 from [Arabidopsis thaliana]; contains Pfam profile: PF00170 bZIP transcription factor Length = 359 Score = 29.5 bits (63), Expect = 2.9 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +2 Query: 197 PLQTPGSVLSVSTPXRSRG 253 PL TPG++LS+ TP +S G Sbjct: 108 PLTTPGTLLSIDTPTKSTG 126 >At2g46270.1 68415.m05753 G-box binding factor 3 (GBF3) identical to G-box binding factor 3 (GBF3) SP:P42776 from [Arabidopsis thaliana]; contains Pfam profile: PF00170 bZIP transcription factor Length = 382 Score = 29.5 bits (63), Expect = 2.9 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +2 Query: 197 PLQTPGSVLSVSTPXRSRG 253 PL TPG++LS+ TP +S G Sbjct: 108 PLTTPGTLLSIDTPTKSTG 126 >At2g39790.1 68415.m04885 mitochondrial glycoprotein family protein / MAM33 family protein low similarity to SUAPRGA1 [Emericella nidulans] GI:6562379; contains Pfam profile PF02330: Mitochondrial glycoprotein Length = 240 Score = 28.3 bits (60), Expect = 6.8 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +3 Query: 372 WCVQRPLVKKCNCCSRCNSIQAVV 443 WCV+R K + C + SI AVV Sbjct: 5 WCVRRSASKLASACGQARSISAVV 28 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,517,540 Number of Sequences: 28952 Number of extensions: 236227 Number of successful extensions: 520 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 510 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 518 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1950880000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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