Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H08
         (843 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...    95   5e-20
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...    92   4e-19
At5g41820.1 68418.m05092 geranylgeranyl transferase alpha subuni...    30   2.2  
At2g46270.2 68415.m05754 G-box binding factor 3 (GBF3) identical...    29   2.9  
At2g46270.1 68415.m05753 G-box binding factor 3 (GBF3) identical...    29   2.9  
At2g39790.1 68415.m04885 mitochondrial glycoprotein family prote...    28   6.8  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score = 95.1 bits (226), Expect = 5e-20
 Identities = 42/50 (84%), Positives = 47/50 (94%)
 Frame = +2

Query: 242 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 391
           R RGGN K+RALRLDTGN+SWGSE +TRKTR++DVVYNASNNELVRTKTL
Sbjct: 48  RVRGGNVKWRALRLDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTL 97



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 19/28 (67%), Positives = 23/28 (82%)
 Frame = +1

Query: 397 RNAIVVVDATPFRQWYESHYTLPLGRKK 480
           ++AIV VDA PF+QWY SHY + LGRKK
Sbjct: 99  KSAIVQVDAAPFKQWYLSHYGVELGRKK 126



 Score = 36.7 bits (81), Expect = 0.019
 Identities = 17/35 (48%), Positives = 25/35 (71%)
 Frame = +1

Query: 124 HQRRATGGQRCAQFRKQRXSALGRPAANTRLGPQR 228
           H+RRATGG++  Q+RK+R   +GR  ANT+L   +
Sbjct: 9   HKRRATGGKQ-KQWRKKRKYEMGRQPANTKLSSNK 42


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score = 92.3 bits (219), Expect = 4e-19
 Identities = 42/50 (84%), Positives = 45/50 (90%)
 Frame = +2

Query: 242 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 391
           R RGGN K+RALRLDTGNFSWGSE  TRKTRI+DV YNASNNELVRT+TL
Sbjct: 48  RVRGGNVKWRALRLDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTL 97



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 20/50 (40%), Positives = 28/50 (56%)
 Frame = +1

Query: 397 RNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTXAXEAIINKKRSQRQQE 546
           ++AIV VDA PF+Q Y  HY + +GRKK  +     E +      QR+ E
Sbjct: 99  KSAIVQVDAAPFKQGYLQHYGVDIGRKKKGE-AVTTEEVKKSNHVQRKLE 147



 Score = 35.5 bits (78), Expect = 0.044
 Identities = 17/35 (48%), Positives = 24/35 (68%)
 Frame = +1

Query: 124 HQRRATGGQRCAQFRKQRXSALGRPAANTRLGPQR 228
           H+RRATGG++   +RK+R   LGR  ANT+L   +
Sbjct: 9   HKRRATGGKQ-KMWRKKRKYELGRQPANTKLSSNK 42


>At5g41820.1 68418.m05092 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 687

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 22/65 (33%), Positives = 32/65 (49%)
 Frame = -1

Query: 405 CIS*PRVFVRTNSLLDALYTTSMIRVLRVEHSDPQEKLPVSRRSARYLVFPPRERXGVDT 226
           C++     +R+ S LD+L     +RVL V H+    +LPV   + RYL   P    G +T
Sbjct: 572 CLNLSHNRIRSFSALDSLRHLKQLRVLDVSHNHICGELPVD--TTRYLCSSPLSNSG-ET 628

Query: 225 LRTEP 211
            R  P
Sbjct: 629 GREVP 633


>At2g46270.2 68415.m05754 G-box binding factor 3 (GBF3) identical to
           G-box binding factor 3 (GBF3) SP:P42776 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00170
           bZIP transcription factor
          Length = 359

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 197 PLQTPGSVLSVSTPXRSRG 253
           PL TPG++LS+ TP +S G
Sbjct: 108 PLTTPGTLLSIDTPTKSTG 126


>At2g46270.1 68415.m05753 G-box binding factor 3 (GBF3) identical to
           G-box binding factor 3 (GBF3) SP:P42776 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00170
           bZIP transcription factor
          Length = 382

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 197 PLQTPGSVLSVSTPXRSRG 253
           PL TPG++LS+ TP +S G
Sbjct: 108 PLTTPGTLLSIDTPTKSTG 126


>At2g39790.1 68415.m04885 mitochondrial glycoprotein family protein
           / MAM33 family protein low similarity to SUAPRGA1
           [Emericella nidulans] GI:6562379; contains Pfam profile
           PF02330: Mitochondrial glycoprotein
          Length = 240

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 372 WCVQRPLVKKCNCCSRCNSIQAVV 443
           WCV+R   K  + C +  SI AVV
Sbjct: 5   WCVRRSASKLASACGQARSISAVV 28


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,517,540
Number of Sequences: 28952
Number of extensions: 236227
Number of successful extensions: 520
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)