Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H07
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    28   1.9  
SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces pombe...    28   1.9  
SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|...    28   1.9  

>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 498 LNMTGLLFSIKCT-MN*INSVVPIPXHEVYIDLFDQIDENLRTALQKDLHEMA 653
           L+M G+L +  CT  N  +S  P+P  E+YI +F+ I+        K L  MA
Sbjct: 34  LDMNGILHN--CTHKNDDHSSPPLPEEEMYIAIFNYIEHLFEKIKPKKLLYMA 84


>SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = +2

Query: 359 QTTLQTDEVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFNKVHH 538
           QT LQ +   N     +   L+  E I+ V +  P    D++++  A Y  TLI NK+  
Sbjct: 13  QTALQPNSYVNFDAQQTSSTLLPVEVIDSVMQYLPAH--DVIQSSFASYPLTLIANKIIR 70

Query: 539 ELNQFCSAHTL 571
               F   ++L
Sbjct: 71  ARLSFLDEYSL 81


>SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 177

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 523 ENKSPVIFSCEVAHHI*YALWVQLIDYLDSF 431
           + + PV F   V  H+  + W++L DY+ +F
Sbjct: 48  QGQKPVTFFGSVTEHVSNSWWIKLYDYMMTF 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,533,225
Number of Sequences: 5004
Number of extensions: 45832
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)