BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_H07 (855 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 28 1.9 SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces pombe... 28 1.9 SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|... 28 1.9 >SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1328 Score = 27.9 bits (59), Expect = 1.9 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = +3 Query: 498 LNMTGLLFSIKCT-MN*INSVVPIPXHEVYIDLFDQIDENLRTALQKDLHEMA 653 L+M G+L + CT N +S P+P E+YI +F+ I+ K L MA Sbjct: 34 LDMNGILHN--CTHKNDDHSSPPLPEEEMYIAIFNYIEHLFEKIKPKKLLYMA 84 >SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces pombe|chr 1|||Manual Length = 243 Score = 27.9 bits (59), Expect = 1.9 Identities = 20/71 (28%), Positives = 32/71 (45%) Frame = +2 Query: 359 QTTLQTDEVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFNKVHH 538 QT LQ + N + L+ E I+ V + P D++++ A Y TLI NK+ Sbjct: 13 QTALQPNSYVNFDAQQTSSTLLPVEVIDSVMQYLPAH--DVIQSSFASYPLTLIANKIIR 70 Query: 539 ELNQFCSAHTL 571 F ++L Sbjct: 71 ARLSFLDEYSL 81 >SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 177 Score = 27.9 bits (59), Expect = 1.9 Identities = 10/31 (32%), Positives = 18/31 (58%) Frame = -3 Query: 523 ENKSPVIFSCEVAHHI*YALWVQLIDYLDSF 431 + + PV F V H+ + W++L DY+ +F Sbjct: 48 QGQKPVTFFGSVTEHVSNSWWIKLYDYMMTF 78 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,533,225 Number of Sequences: 5004 Number of extensions: 45832 Number of successful extensions: 113 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 110 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 113 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 424464280 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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