Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H07
         (855 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27889| Best HMM Match : No HMM Matches (HMM E-Value=.)              96   3e-20
SB_54084| Best HMM Match : zf-CCCH (HMM E-Value=0.00066)               31   1.6  
SB_7922| Best HMM Match : SMC_C (HMM E-Value=1.5e-08)                  29   4.8  

>SB_27889| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 96.3 bits (229), Expect = 3e-20
 Identities = 46/59 (77%), Positives = 52/59 (88%)
 Frame = +3

Query: 597 DQIDENLRTALQKDLHEMAPGLRVQAVRVTKPKIPESIRKNYELMEAEKSKLLIAAQHQ 773
           DQIDENL+TALQ DL +MAPGL V AVRVTKPKIPE+IR+NYE+ME EK+KLLIA Q Q
Sbjct: 18  DQIDENLKTALQSDLVKMAPGLTVHAVRVTKPKIPETIRRNYEIMEGEKTKLLIANQKQ 76


>SB_54084| Best HMM Match : zf-CCCH (HMM E-Value=0.00066)
          Length = 731

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
 Frame = +3

Query: 600 QIDENLRTALQKD---LHEMAPGLRVQAVRVTKPK----IPESIRKNYELMEAEKSKLLI 758
           Q+D N    +  +   L E  PGL  +A  +TKPK    +PE  + +Y+L   +K + ++
Sbjct: 322 QLDRNRLPTVSNNFETLTECKPGLLAKAESLTKPKTQKEVPEHSQSSYQLFSVQKGEQML 381


>SB_7922| Best HMM Match : SMC_C (HMM E-Value=1.5e-08)
          Length = 493

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +3

Query: 591 LFDQIDENLRTALQKDLHEMAPGLRVQAVRVT---KPKIPESIRKNY 722
           LFD+ID+ L    +K + EM   L V+A  +T   +P++ ES  K Y
Sbjct: 76  LFDEIDQALDPQFRKAVAEMIRNLAVKAQFITTTFRPELLESADKFY 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,695,173
Number of Sequences: 59808
Number of extensions: 335394
Number of successful extensions: 594
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)