Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H07
         (855 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03510.1 68415.m00311 band 7 family protein contains Pfam pro...   126   2e-29
At4g29950.2 68417.m04261 microtubule-associated protein identica...    29   3.9  
At4g29950.1 68417.m04260 microtubule-associated protein identica...    29   3.9  
At1g29030.1 68414.m03553 apoptosis inhibitory 5 (API5) family pr...    28   6.9  

>At2g03510.1 68415.m00311 band 7 family protein contains Pfam
           profile PF01145: SPFH domain / Band 7 family
          Length = 356

 Score =  126 bits (303), Expect = 2e-29
 Identities = 51/95 (53%), Positives = 74/95 (77%)
 Frame = +2

Query: 287 ALLPVTSQAGFHMMIPLLTSYKAIQTTLQTDEVKNVPCGTSGGVLIYFERIEVVNKLDPQ 466
           ALL + ++ GFH+ +P +T+Y+ +Q TLQTD+V+++PCGT GGVLI FE+IEVVN+L   
Sbjct: 63  ALLNIITEPGFHLKLPFITNYEPVQVTLQTDQVRDIPCGTKGGVLITFEKIEVVNRLRKD 122

Query: 467 SVLDMVRNFTAEYDRTLIFNKVHHELNQFCSAHTL 571
            V D + N+   YD T I++K+HHE+NQFCS+H+L
Sbjct: 123 FVYDTLLNYGVNYDNTWIYDKIHHEINQFCSSHSL 157



 Score = 89.4 bits (212), Expect = 3e-18
 Identities = 39/66 (59%), Positives = 53/66 (80%)
 Frame = +3

Query: 576 EVYIDLFDQIDENLRTALQKDLHEMAPGLRVQAVRVTKPKIPESIRKNYELMEAEKSKLL 755
           +VYID+FDQIDE ++ ALQ D    APG+ + +VRVTKPKIPES+R+N+E ME E++K+L
Sbjct: 159 QVYIDIFDQIDERMKDALQADCTRYAPGIEILSVRVTKPKIPESVRRNFEQMEEERTKVL 218

Query: 756 IAAQHQ 773
           IA + Q
Sbjct: 219 IAIEKQ 224


>At4g29950.2 68417.m04261 microtubule-associated protein identical
           to microtubule-associated protein GI:5032258 from
           [Arabidopsis thaliana]; similar to TBC1 domain family
           member 5 (Swiss-Prot:Q92609) [Homo sapiens]; contains
           Pfam profile PF00566: TBC domain
          Length = 703

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = +2

Query: 410 GGVLIYFERIEVVNKLDP--QSVLDMVRNFTAEYDRTLIFNKVHHELNQFCSAHTLXRGI 583
           GG+    ++I+ +++LDP  QS++ +   + AE +  ++ ++   E + +C    L  G+
Sbjct: 84  GGIQGNSKKIKSLDELDPEIQSIVRLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMNGV 143

Query: 584 H 586
           H
Sbjct: 144 H 144


>At4g29950.1 68417.m04260 microtubule-associated protein identical
           to microtubule-associated protein GI:5032258 from
           [Arabidopsis thaliana]; similar to TBC1 domain family
           member 5 (Swiss-Prot:Q92609) [Homo sapiens]; contains
           Pfam profile PF00566: TBC domain
          Length = 828

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = +2

Query: 410 GGVLIYFERIEVVNKLDP--QSVLDMVRNFTAEYDRTLIFNKVHHELNQFCSAHTLXRGI 583
           GG+    ++I+ +++LDP  QS++ +   + AE +  ++ ++   E + +C    L  G+
Sbjct: 209 GGIQGNSKKIKSLDELDPEIQSIVRLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMNGV 268

Query: 584 H 586
           H
Sbjct: 269 H 269


>At1g29030.1 68414.m03553 apoptosis inhibitory 5 (API5) family
           protein contains Pfam profile PF05918: Apoptosis
           inhibitory protein 5 (API5)
          Length = 556

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 594 FDQIDENLRTALQKDLHEMAPGLRVQAVRVTKPKIPESIRK 716
           FDQ+ E  +  L + L EM+P    Q  R   P I + ++K
Sbjct: 287 FDQLPEERKLNLLRALAEMSPYTTAQVARQILPSIVQLLKK 327


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,062,667
Number of Sequences: 28952
Number of extensions: 230534
Number of successful extensions: 515
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)