Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H06
         (891 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33227| Best HMM Match : DEP (HMM E-Value=0.042)                     29   5.1  
SB_2410| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.8  

>SB_33227| Best HMM Match : DEP (HMM E-Value=0.042)
          Length = 765

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 722 QPAKYENDVLFFIYNRQFNDALELGTNRERLGRPQGRWTRWXKXA 856
           QPA  +  +   +YN  +N+  +  TN ++ G  +G+   W K A
Sbjct: 481 QPASMKTSLSATVYNYSYNELRDSLTNSDKTGGRKGQDIIWQKAA 525


>SB_2410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
 Frame = +2

Query: 734 YENDVLFFIYNRQFNDALELGT---------NRERLGRPQGRWTRWXKXAGLPEIXSW 880
           ++N VL  + N  F   + +GT          +E  G  +GRW    K AG+ E  +W
Sbjct: 153 HKNAVLQQVQNSPFELRVTMGTPPAGYTRYCTQEESGTSRGRWVECGKLAGIEECDAW 210


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,715,098
Number of Sequences: 59808
Number of extensions: 458219
Number of successful extensions: 987
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)