BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_H06 (891 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF101319-3|AAC69355.1| 331|Caenorhabditis elegans Hypothetical ... 29 3.4 Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical pr... 29 4.5 Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical pr... 29 4.5 >AF101319-3|AAC69355.1| 331|Caenorhabditis elegans Hypothetical protein K08D9.5 protein. Length = 331 Score = 29.5 bits (63), Expect = 3.4 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = +2 Query: 425 AGNYVKIIYRNYNLALKLGSTTNPSNERIAYGDGVD-KHTELVSWKFITLWENNRVYFKI 601 A +KII Y++ S NE A + +D HT + + +FIT ++N V F + Sbjct: 57 ANTMIKIIQNEYSI----DSLLETDNETSALIETLDVSHTFIEAAEFITFLDSNDVLFPV 112 Query: 602 HNTKYNQ 622 + Y Q Sbjct: 113 NYPTYTQ 119 >Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical protein W08E3.2 protein. Length = 584 Score = 29.1 bits (62), Expect = 4.5 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = -1 Query: 867 SGRPAXFXHRVQRPCGLPRRSRFVPSSKAS 778 SG P+ R+ P G PRRS P S AS Sbjct: 295 SGPPSRLRGRMSHPMGPPRRSSGAPPSSAS 324 >Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical protein W08E3.2 protein. Length = 584 Score = 29.1 bits (62), Expect = 4.5 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = -1 Query: 867 SGRPAXFXHRVQRPCGLPRRSRFVPSSKAS 778 SG P+ R+ P G PRRS P S AS Sbjct: 295 SGPPSRLRGRMSHPMGPPRRSSGAPPSSAS 324 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,312,673 Number of Sequences: 27780 Number of extensions: 337961 Number of successful extensions: 937 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 769 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 937 length of database: 12,740,198 effective HSP length: 81 effective length of database: 10,490,018 effective search space used: 2255353870 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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