Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H06
         (891 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    32   0.59 
At4g15260.1 68417.m02338 UDP-glucoronosyl/UDP-glucosyl transfera...    28   7.2  
At1g61620.1 68414.m06943 expressed protein contains Pfam profile...    28   7.2  

>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 313 LIIDKRRNTMEYCYKLWVGNGQEIVRKYFPLNF 411
           +++D +    EY  KL + +G +   KYFPL F
Sbjct: 386 IVVDTKNLNCEYQLKLMIASGVDAANKYFPLAF 418


>At4g15260.1 68417.m02338 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 359

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = -3

Query: 550 DEFSMLVYTIAVGNSLIRGIGCGT-ELQSEVVVSVNDLDIVSGHDEF*SLMGSTF*QFPV 374
           +EF +  Y I   N+   GI     E+  +    V+DLD      EF  L       +PV
Sbjct: 11  NEFGVPCYMIYTSNATFLGITLHVQEMYDDKKYDVSDLDESVNELEFPCLTRP----YPV 66

Query: 373 RCRPTACSSTPW 338
           +C P   SS  W
Sbjct: 67  KCLPHILSSKDW 78


>At1g61620.1 68414.m06943 expressed protein contains Pfam profile:
           PF01363 FYVE zinc finger
          Length = 310

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 728 AKYENDVLFFIYNRQFNDALELGTNRERLGR 820
           +K  ND+ +F Y+ +    L  GT RERLGR
Sbjct: 6   SKNNNDLAYFTYDEK--KKLGYGTQRERLGR 34


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,438,306
Number of Sequences: 28952
Number of extensions: 313043
Number of successful extensions: 701
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)