BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_H05 (885 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ... 26 8.2 >SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 325 Score = 25.8 bits (54), Expect = 8.2 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 2/85 (2%) Frame = +3 Query: 165 YAEKYPITSQFSRVSPTPSXIFTTLSLGTGKWGEGRSSGLWERATKGLFGKGGY--NREF 338 Y++ YP + SR TPS ++G G + S + G +GG N Sbjct: 174 YSQSYPTDTYGSRQKATPSD-----TVGGGAYDYSSSGSHTHGGSHGTEHRGGSYGNDNT 228 Query: 339 FNDDRGKLTGQAYGTRVLGPGGDST 413 N RG ++ Y G G +T Sbjct: 229 ANKTRGAVSSAGYSGEGYGKGTYAT 253 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,030,572 Number of Sequences: 5004 Number of extensions: 60788 Number of successful extensions: 149 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 145 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 149 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 444486180 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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