Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_H05
(885 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0353 - 4623910-4624812 33 0.30
04_04_1463 + 33787799-33787973,33788669-33789096 30 2.8
01_01_0538 - 3938389-3939727,3939828-3940203,3940299-3940516,394... 30 2.8
10_08_0227 - 16004868-16005449 29 5.0
01_01_0098 + 744582-745380,746107-746130,746500-747569 29 5.0
07_03_1175 - 24555965-24556117,24557809-24558264,24558270-245584... 29 6.6
10_08_0220 - 15977247-15977804 28 8.7
08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817 28 8.7
07_03_1433 + 26513728-26514135,26525534-26526280 28 8.7
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 24 9.1
>04_01_0353 - 4623910-4624812
Length = 300
Score = 33.1 bits (72), Expect = 0.30
Identities = 32/110 (29%), Positives = 41/110 (37%)
Frame = +3
Query: 216 PSXIFTTLSLGTGKWGEGRSSGLWERATKGLFGKGGYNREFFNDDRGKLTGQAYGTRVLG 395
PS + T G G LW GL G GG+ F + G G LG
Sbjct: 72 PSLCLSPYIAATASGGRGGGDWLWAATAAGL-GGGGHGSSGFAARGNRRCGSIGGG--LG 128
Query: 396 PGGDSTSYGGRLDWANENAKGCY*LETGKLVAALGSKHQLPGVWDLGKNT 545
GG + G D A A+G TG + GS + G D+G +T
Sbjct: 129 RGGSAAEEVGDGD-AGSTARGHGKASTGGGLGRGGSATEEVGDGDVGSST 177
>04_04_1463 + 33787799-33787973,33788669-33789096
Length = 200
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +3
Query: 249 TGKWGEGRSSGLWERATKGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGP--GGDSTSYG 422
TG+ G+ SG W R G +GGY + +G+ G R G GGD
Sbjct: 106 TGEKGDEWRSGEWRRQLAG--WEGGYGVRRATAEWAMRSGRRVGARAPGDDGGGDVHRRD 163
Query: 423 GRLDW 437
GR +W
Sbjct: 164 GRENW 168
>01_01_0538 -
3938389-3939727,3939828-3940203,3940299-3940516,
3940607-3940769,3940866-3941100,3941186-3941353
Length = 832
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 205 SVRHPRRYSRLCHLGQGNGGREGLRDFGRERPRDFLVKVV 324
S+ +P+ Y+RLC G G GG GL +G P FL V+
Sbjct: 16 SLGYPKAYARLCRGGGGGGG--GL-PYGHGPPHGFLPYVL 52
>10_08_0227 - 16004868-16005449
Length = 193
Score = 29.1 bits (62), Expect = 5.0
Identities = 25/86 (29%), Positives = 33/86 (38%)
Frame = +3
Query: 312 GKGGYNREFFNDDRGKLTGQAYGTRVLGPGGDSTSYGGRLDWANENAKGCY*LETGKLVA 491
G+GG N + + G G YG+ G G +T+ GG G G
Sbjct: 35 GQGGGNGGGYVNGGGVGNGNGYGSSESGSGVTATAGGGGWGGGGSQYNG---TGFGSGSG 91
Query: 492 ALGSKHQLPGVWDLGKNTHLSAGGSG 569
A S Q+ + G H SAGG G
Sbjct: 92 AGSSSGQMAEGYYPGYGGHASAGGGG 117
>01_01_0098 + 744582-745380,746107-746130,746500-747569
Length = 630
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 41 KEFLTFLSRAAKLSQFKMYSKGVVIRCIPCMRERSSFYA 157
KEF T SRA+ + + V+R IPC+R+ +S ++
Sbjct: 144 KEFTT--SRASMIDGYNTVIADKVVRLIPCLRDTTSHFS 180
>07_03_1175 -
24555965-24556117,24557809-24558264,24558270-24558436,
24558468-24558756,24559620-24559726,24559841-24559909,
24560001-24560109
Length = 449
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 303 GLFGKGGYNREFFNDDRGKLTGQAYGTRVLGPGGDSTSYGG 425
G+ G GG+ + G +G YGT G GG GG
Sbjct: 113 GIRGGGGFGAGGYGSGGGYSSGGGYGTGEYGRGGGYAGNGG 153
>10_08_0220 - 15977247-15977804
Length = 185
Score = 28.3 bits (60), Expect = 8.7
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Frame = +3
Query: 246 GTGKWGEGRSSGLWERATKGLFGKGGYNREFFNDDRGKLTGQAYGT---RVLGPGGDSTS 416
G+G WG G SG + G + GG E G+ G YG+ G G S
Sbjct: 45 GSG-WGSGSGSGYGQAGGDGSYASGG--GEGGGGGGGENGGSGYGSGSGSGYGQAGGSGP 101
Query: 417 YGG 425
YGG
Sbjct: 102 YGG 104
>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
Length = 958
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +3
Query: 231 TTLSLGTGKWGEGRSSGLWERATKGLFGKGGYNREFFNDDRGKLTGQAYG 380
TTLS G W+R+ L +GG+NR N R + ++ G
Sbjct: 149 TTLSRGYSSRISSSGPDAWKRSRSPLSPRGGWNRSRRNRSRSRSRSRSIG 198
>07_03_1433 + 26513728-26514135,26525534-26526280
Length = 384
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1
Query: 303 PWSLSPKVPKTFPPPIS 253
P SLSP +P T+PPP S
Sbjct: 37 PPSLSPSMPPTYPPPSS 53
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 24.2 bits (50), Expect(2) = 9.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 468 LETGKLVAALGSKHQLPGVWDLGKNTHLSAG 560
+E+ KLV+ L + +PG +GK AG
Sbjct: 74 VESSKLVSTLRASSVMPGRASVGKEMEAEAG 104
Score = 22.2 bits (45), Expect(2) = 9.1
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 348 DRGKLTGQAYGTRVLGPGGDSTSYGGR 428
DRGK A G+R L P S S R
Sbjct: 7 DRGKAAPAAAGSRPLTPKAFSASSSAR 33
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,477,471
Number of Sequences: 37544
Number of extensions: 454027
Number of successful extensions: 1409
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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