Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H05
         (885 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37351| Best HMM Match : DEAD (HMM E-Value=0)                        32   0.54 
SB_2193| Best HMM Match : Glyco_transf_8 (HMM E-Value=0.00071)         30   2.9  
SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_55898| Best HMM Match : Carb_anhydrase (HMM E-Value=3.6)            29   5.0  
SB_298| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.7  

>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 688

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = +3

Query: 246 GTGKWGEGRSSGLWERATKGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGPG 401
           G G WG   +   W    +G  G GGYNR  +N D  +  G   G R  G G
Sbjct: 609 GVGSWGNNNNRQSWGGRNQG--GSGGYNR--YNSDNSQ--GSFGGNRGFGGG 654


>SB_2193| Best HMM Match : Glyco_transf_8 (HMM E-Value=0.00071)
          Length = 482

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -1

Query: 501 IPALPPICLFQVNSSPWRSHWPSLDDHRNWYCRLQVLILWCRKPVRS-VCRDHH*RTPCY 325
           +P+L       + SSP    W   D  + W CR  +    CR  ++  +CRD+  +  C 
Sbjct: 280 MPSLNVYIKQMLESSPNEKKWLCRDYIKQWLCRDYIKQWLCRDYIKQWLCRDYLKQWLCR 339

Query: 324 NHLYQ 310
           +++ Q
Sbjct: 340 DYIKQ 344


>SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 955

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 280 PEDLPSPHFPVPSDKVVNIXEGVGLTLENWLVIGYFSA*P 161
           P +  SP F  P   V  + +G  L L +W+  GYF++ P
Sbjct: 770 PRNYSSPEFAEPRSIVCRLQKG--LVLASWVFSGYFASRP 807


>SB_55898| Best HMM Match : Carb_anhydrase (HMM E-Value=3.6)
          Length = 531

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
 Frame = -1

Query: 606 TDIXXSVTELLRDHSXRLTSECSYQDPTRPEADASIPALPPICLFQVNSSPW----RSHW 439
           TD+  +    + D +  +T    Y    R E +  +P L    +F++    W    +  W
Sbjct: 256 TDVAQTPKHSVTDVTQTVTQR--YSQTARDEEEV-VPILAARSMFKLGRMEWEVLTKEGW 312

Query: 438 PSLDDHRN 415
            SLDDH+N
Sbjct: 313 TSLDDHKN 320


>SB_298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = +3

Query: 246 GTGKWGEGRSSGLWERATKGLFGKGGYNREFFNDDRGKLTGQAYGTRVL 392
           G G +G G  SG      +GLFG G Y+ E     R    G AY    L
Sbjct: 114 GRGLFGGGAYSGEGLIRGRGLFGVGAYSGEALIRGRRLFGGGAYSGEAL 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,260,495
Number of Sequences: 59808
Number of extensions: 493749
Number of successful extensions: 1204
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)