BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_H05 (885 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 32 0.63 AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 30 1.9 Z68750-1|CAA92963.1| 284|Caenorhabditis elegans Hypothetical pr... 29 3.3 Z93382-9|CAB07615.2| 462|Caenorhabditis elegans Hypothetical pr... 29 5.8 U00036-2|AAK29859.1| 592|Caenorhabditis elegans Dumpy : shorter... 29 5.8 AF348168-1|AAK37546.1| 462|Caenorhabditis elegans TRF-1 protein. 29 5.8 Z69383-1|CAA93412.1| 409|Caenorhabditis elegans Hypothetical pr... 28 7.7 U53150-10|AAA96130.3| 433|Caenorhabditis elegans Hypothetical p... 28 7.7 U49830-13|AAK31474.1| 826|Caenorhabditis elegans Hypothetical p... 28 7.7 AF003130-1|AAB54124.2| 423|Caenorhabditis elegans Hypothetical ... 28 7.7 >AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical protein T20B6.3 protein. Length = 259 Score = 31.9 bits (69), Expect = 0.63 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Frame = +3 Query: 228 FTTLSLGTGKWGEGRSSGLWERATKGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGPGGD 407 F ++ G+ G G S G G +G+GGY D G + G YG G GGD Sbjct: 67 FAAMTGSYGRGGYGGSGGGAFGGFNGGYGQGGYGGG--GDFGGGMGGGGYGGGGYGGGGD 124 Query: 408 -STSYGG 425 YGG Sbjct: 125 GGGGYGG 131 >AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical protein Y43F8C.20 protein. Length = 193 Score = 30.3 bits (65), Expect = 1.9 Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 5/76 (6%) Frame = +3 Query: 246 GTGKWGEGRSSGLWERATKGLF----GKGGYNREFFNDDRGKLTGQAYGTRVL-GPGGDS 410 G +WG G G W G + G+GG + N G G G G GG Sbjct: 36 GGNRWGGGGGPGGWGNNGGGGWGRGGGRGGGDWGGNNGGGGNWGGNGGGRGDWGGNGGGG 95 Query: 411 TSYGGRLDWANENAKG 458 GGR DW N G Sbjct: 96 RGGGGRGDWGGNNNGG 111 >Z68750-1|CAA92963.1| 284|Caenorhabditis elegans Hypothetical protein K01A6.4 protein. Length = 284 Score = 29.5 bits (63), Expect = 3.3 Identities = 18/60 (30%), Positives = 25/60 (41%) Frame = +3 Query: 249 TGKWGEGRSSGLWERATKGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGPGGDSTSYGGR 428 +G G+G SG + +G FG G F + +G G G G GG GG+ Sbjct: 174 SGFGGQGMQSGFGMNSQQGDFGGQGQQSGFEGNTQGHSQGGFGGQSSSGFGGQQGGQGGQ 233 >Z93382-9|CAB07615.2| 462|Caenorhabditis elegans Hypothetical protein F45G2.6 protein. Length = 462 Score = 28.7 bits (61), Expect = 5.8 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = -1 Query: 501 IPALPPICLFQVNSSPWRSHWPSLDDH 421 I ALP +C F+ + PW +L DH Sbjct: 73 ILALPVVCTFESSGCPWDGQLGTLHDH 99 >U00036-2|AAK29859.1| 592|Caenorhabditis elegans Dumpy : shorter than wild-typeprotein 31, isoform a protein. Length = 592 Score = 28.7 bits (61), Expect = 5.8 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Frame = +1 Query: 454 RAAIDLKQANWWQRWDR-SISFRACGILVRTLTCQPXGVVSKE 579 RA + N W W S + ACG +RT TC P S E Sbjct: 485 RAVPEAGNWNSWSPWTACSATCGACGSRMRTRTCPPGNACSGE 527 >AF348168-1|AAK37546.1| 462|Caenorhabditis elegans TRF-1 protein. Length = 462 Score = 28.7 bits (61), Expect = 5.8 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = -1 Query: 501 IPALPPICLFQVNSSPWRSHWPSLDDH 421 I ALP +C F+ + PW +L DH Sbjct: 73 ILALPVVCTFESSGCPWDGQLGTLHDH 99 >Z69383-1|CAA93412.1| 409|Caenorhabditis elegans Hypothetical protein F13E9.4 protein. Length = 409 Score = 28.3 bits (60), Expect = 7.7 Identities = 34/139 (24%), Positives = 49/139 (35%) Frame = +3 Query: 162 GYAEKYPITSQFSRVSPTPSXIFTTLSLGTGKWGEGRSSGLWERATKGLFGKGGYNREFF 341 GY ++ S F + S T T L + +G G GG +++ Sbjct: 32 GYGQQQQGFSGFGQGSATNRQGMTGQGLLESSYQQGYGQNQGSMQGYSQQGYGGNSQQ-- 89 Query: 342 NDDRGKLTGQAYGTRVLGPGGDSTSYGGRLDWANENAKGCY*LETGKLVAALGSKHQLPG 521 D G Q G V G GG S SYG + + + + A GS + G Sbjct: 90 --DYGYSQSQGSGMGVQGYGGSSQSYGQQAFAQQQRPQQGFQSNGFSGQQASGSMNSFGG 147 Query: 522 VWDLGKNTHLSAGGSGL*G 578 G+N + G SG G Sbjct: 148 QGGYGQNQNGFGGQSGFSG 166 >U53150-10|AAA96130.3| 433|Caenorhabditis elegans Hypothetical protein F20A1.9 protein. Length = 433 Score = 28.3 bits (60), Expect = 7.7 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Frame = +3 Query: 264 EGRSSGLWERATKGLFGKGGYNREFFNDDRGKL-TGQAY--GTRVLGPGGDSTSYGG 425 E + L R T GL+G G Y E +G G A G+ +G G DS YGG Sbjct: 32 EVKKRWLGARGTAGLYGNGKYYYEVTITSKGLCRVGWATLGGSLNIGKGLDSFGYGG 88 >U49830-13|AAK31474.1| 826|Caenorhabditis elegans Hypothetical protein C33F10.2 protein. Length = 826 Score = 28.3 bits (60), Expect = 7.7 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = -1 Query: 492 LPPICLFQVNSSPWRSHWPSLDDHRNWYC 406 +PP C F+ ++SPW+ SL + +C Sbjct: 687 IPPSCTFRAHASPWKGTSLSLQQLSSIHC 715 >AF003130-1|AAB54124.2| 423|Caenorhabditis elegans Hypothetical protein F55A12.6 protein. Length = 423 Score = 28.3 bits (60), Expect = 7.7 Identities = 18/73 (24%), Positives = 27/73 (36%) Frame = +3 Query: 246 GTGKWGEGRSSGLWERATKGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGPGGDSTSYGG 425 G G +G G ++G + G GY ++N G G Y + + YGG Sbjct: 126 GNGYYGNGYNNGYYGNGYYGNGYGNGYGNGYYNQYNGGYGGNGYYNQYY---NGNNYYGG 182 Query: 426 RLDWANENAKGCY 464 + N N Y Sbjct: 183 NRGYYNYNQGQSY 195 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,950,848 Number of Sequences: 27780 Number of extensions: 357231 Number of successful extensions: 896 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 862 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 894 length of database: 12,740,198 effective HSP length: 81 effective length of database: 10,490,018 effective search space used: 2234373834 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -