Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H05
         (885 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    32   0.63 
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    30   1.9  
Z68750-1|CAA92963.1|  284|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z93382-9|CAB07615.2|  462|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U00036-2|AAK29859.1|  592|Caenorhabditis elegans Dumpy : shorter...    29   5.8  
AF348168-1|AAK37546.1|  462|Caenorhabditis elegans TRF-1 protein.      29   5.8  
Z69383-1|CAA93412.1|  409|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U53150-10|AAA96130.3|  433|Caenorhabditis elegans Hypothetical p...    28   7.7  
U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical p...    28   7.7  
AF003130-1|AAB54124.2|  423|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +3

Query: 228 FTTLSLGTGKWGEGRSSGLWERATKGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGPGGD 407
           F  ++   G+ G G S G       G +G+GGY      D  G + G  YG    G GGD
Sbjct: 67  FAAMTGSYGRGGYGGSGGGAFGGFNGGYGQGGYGGG--GDFGGGMGGGGYGGGGYGGGGD 124

Query: 408 -STSYGG 425
               YGG
Sbjct: 125 GGGGYGG 131


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
 Frame = +3

Query: 246 GTGKWGEGRSSGLWERATKGLF----GKGGYNREFFNDDRGKLTGQAYGTRVL-GPGGDS 410
           G  +WG G   G W     G +    G+GG +    N   G   G   G     G GG  
Sbjct: 36  GGNRWGGGGGPGGWGNNGGGGWGRGGGRGGGDWGGNNGGGGNWGGNGGGRGDWGGNGGGG 95

Query: 411 TSYGGRLDWANENAKG 458
              GGR DW   N  G
Sbjct: 96  RGGGGRGDWGGNNNGG 111


>Z68750-1|CAA92963.1|  284|Caenorhabditis elegans Hypothetical
           protein K01A6.4 protein.
          Length = 284

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +3

Query: 249 TGKWGEGRSSGLWERATKGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGPGGDSTSYGGR 428
           +G  G+G  SG    + +G FG  G    F  + +G   G   G    G GG     GG+
Sbjct: 174 SGFGGQGMQSGFGMNSQQGDFGGQGQQSGFEGNTQGHSQGGFGGQSSSGFGGQQGGQGGQ 233


>Z93382-9|CAB07615.2|  462|Caenorhabditis elegans Hypothetical
           protein F45G2.6 protein.
          Length = 462

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 501 IPALPPICLFQVNSSPWRSHWPSLDDH 421
           I ALP +C F+ +  PW     +L DH
Sbjct: 73  ILALPVVCTFESSGCPWDGQLGTLHDH 99


>U00036-2|AAK29859.1|  592|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 31, isoform a protein.
          Length = 592

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +1

Query: 454 RAAIDLKQANWWQRWDR-SISFRACGILVRTLTCQPXGVVSKE 579
           RA  +    N W  W   S +  ACG  +RT TC P    S E
Sbjct: 485 RAVPEAGNWNSWSPWTACSATCGACGSRMRTRTCPPGNACSGE 527


>AF348168-1|AAK37546.1|  462|Caenorhabditis elegans TRF-1 protein.
          Length = 462

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 501 IPALPPICLFQVNSSPWRSHWPSLDDH 421
           I ALP +C F+ +  PW     +L DH
Sbjct: 73  ILALPVVCTFESSGCPWDGQLGTLHDH 99


>Z69383-1|CAA93412.1|  409|Caenorhabditis elegans Hypothetical
           protein F13E9.4 protein.
          Length = 409

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 34/139 (24%), Positives = 49/139 (35%)
 Frame = +3

Query: 162 GYAEKYPITSQFSRVSPTPSXIFTTLSLGTGKWGEGRSSGLWERATKGLFGKGGYNREFF 341
           GY ++    S F + S T     T   L    + +G              G GG +++  
Sbjct: 32  GYGQQQQGFSGFGQGSATNRQGMTGQGLLESSYQQGYGQNQGSMQGYSQQGYGGNSQQ-- 89

Query: 342 NDDRGKLTGQAYGTRVLGPGGDSTSYGGRLDWANENAKGCY*LETGKLVAALGSKHQLPG 521
             D G    Q  G  V G GG S SYG +     +  +  +         A GS +   G
Sbjct: 90  --DYGYSQSQGSGMGVQGYGGSSQSYGQQAFAQQQRPQQGFQSNGFSGQQASGSMNSFGG 147

Query: 522 VWDLGKNTHLSAGGSGL*G 578
               G+N +   G SG  G
Sbjct: 148 QGGYGQNQNGFGGQSGFSG 166


>U53150-10|AAA96130.3|  433|Caenorhabditis elegans Hypothetical
           protein F20A1.9 protein.
          Length = 433

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = +3

Query: 264 EGRSSGLWERATKGLFGKGGYNREFFNDDRGKL-TGQAY--GTRVLGPGGDSTSYGG 425
           E +   L  R T GL+G G Y  E     +G    G A   G+  +G G DS  YGG
Sbjct: 32  EVKKRWLGARGTAGLYGNGKYYYEVTITSKGLCRVGWATLGGSLNIGKGLDSFGYGG 88


>U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical
           protein C33F10.2 protein.
          Length = 826

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 492 LPPICLFQVNSSPWRSHWPSLDDHRNWYC 406
           +PP C F+ ++SPW+    SL    + +C
Sbjct: 687 IPPSCTFRAHASPWKGTSLSLQQLSSIHC 715


>AF003130-1|AAB54124.2|  423|Caenorhabditis elegans Hypothetical
           protein F55A12.6 protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/73 (24%), Positives = 27/73 (36%)
 Frame = +3

Query: 246 GTGKWGEGRSSGLWERATKGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGPGGDSTSYGG 425
           G G +G G ++G +     G     GY   ++N   G   G  Y  +       +  YGG
Sbjct: 126 GNGYYGNGYNNGYYGNGYYGNGYGNGYGNGYYNQYNGGYGGNGYYNQYY---NGNNYYGG 182

Query: 426 RLDWANENAKGCY 464
              + N N    Y
Sbjct: 183 NRGYYNYNQGQSY 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,950,848
Number of Sequences: 27780
Number of extensions: 357231
Number of successful extensions: 896
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)