Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H05
         (885 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ...    32   0.58 
At1g16260.1 68414.m01947 protein kinase family protein contains ...    31   0.77 
At2g24060.1 68415.m02874 translation initiation factor 3 (IF-3) ...    31   1.0  
At1g65440.1 68414.m07424 glycine-rich protein                          31   1.3  
At3g46810.1 68416.m05081 DC1 domain-containing protein contains ...    30   2.3  
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar...    29   5.4  
At3g23490.1 68416.m02959 cyanate lyase family contains Pfam prof...    29   5.4  
At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger) fa...    28   7.2  
At5g36190.1 68418.m04363 hypothetical protein similar to unknown...    28   7.2  
At3g13500.1 68416.m01698 hypothetical protein                          28   7.2  
At1g15840.1 68414.m01901 expressed protein                             28   7.2  
At4g23720.1 68417.m03413 expressed protein ; expression supporte...    28   9.5  
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c...    28   9.5  

>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
           protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 423

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 33/110 (30%), Positives = 46/110 (41%)
 Frame = +3

Query: 249 TGKWGEGRSSGLWERATKGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGPGGDSTSYGGR 428
           +G++G G   G + R    + G GGY         G + G +YG    G GG S SYGG 
Sbjct: 296 SGRYGGG--GGGYNRGGYSMGGGGGYG-----GGPGDMYGGSYGEPGGGYGGPSGSYGGG 348

Query: 429 LDWANENAKGCY*LETGKLVAALGSKHQLPGVWDLGKNTHLSAGGSGL*G 578
              +     G      G +  A G  ++  G +D+G      AGG G  G
Sbjct: 349 YGSSGIGGYG------GGMGGAGGGGYRGGGGYDMGGVGGGGAGGYGAGG 392


>At1g16260.1 68414.m01947 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 270 RSSGLW-ERATKGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGPGGDSTSYGGRLD 434
           R+ GL  ++ T  L G     + F ++D    T +   +R+LG GG  T Y G L+
Sbjct: 355 RNGGLLLQQQTSFLHGSVNRTKVFSSNDLENATDRFNASRILGQGGQGTVYKGMLE 410


>At2g24060.1 68415.m02874 translation initiation factor 3 (IF-3)
           family protein similar to SP|P33319 Translation
           initiation factor IF-3 {Proteus vulgaris}; contains Pfam
           profiles PF00707: Translation initiation factor IF-3,
           C-terminal domain, PF05198: Translation initiation
           factor IF-3, N-terminal domain
          Length = 312

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
 Frame = +1

Query: 67  SSETVTIQNVFQGCCYPL--HSLYA*TLKFLCLLVTQRSIRSPANFQGSVRHPRRYSRLC 240
           +S TV    VF G    +  HSL++   K LC L   ++  S  N   S R  R ++  C
Sbjct: 5   TSSTVGFNAVFTGITKTVSSHSLFSVDSK-LCSLRLSKTELSFTNLTPSPR--RAFAVTC 61

Query: 241 HLGQGNGGREGLRDFGRERPRD 306
             G G GG     D  R RP++
Sbjct: 62  RFGGGGGGYRFSGDNRRGRPKE 83


>At1g65440.1 68414.m07424 glycine-rich protein 
          Length = 1647

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 27/107 (25%), Positives = 37/107 (34%)
 Frame = +3

Query: 249  TGKWGEGRSSGLWERATKGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGPGGDSTSYGGR 428
            TG WG        + A     G GG     + +D G       G    G GG  + +G  
Sbjct: 1545 TGGWGSESGGNKSDGAGSWGSGSGGGGSGGWGNDSGGKKSSEDGGFGSGSGGGGSDWGNE 1604

Query: 429  LDWANENAKGCY*LETGKLVAALGSKHQLPGVWDLGKNTHLSAGGSG 569
                  +A G +  E+G      G K    G W    ++  S GG G
Sbjct: 1605 SGGKKSSADGGWGSESG------GKKSDGEGGWGNEPSSRKSDGGGG 1645


>At3g46810.1 68416.m05081 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 686

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 211 RHPRRYSRLCHLGQGN 258
           RH  R S +CHLGQGN
Sbjct: 301 RHDHRISYICHLGQGN 316


>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 646

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +3

Query: 342 NDDRGKLTG--QAYGTRVLGPGGDSTSYGGR 428
           N+DRG   G    YG R  G GG  + YGGR
Sbjct: 52  NNDRGGYGGANSGYGGRGQGYGGRGSGYGGR 82


>At3g23490.1 68416.m02959 cyanate lyase family contains Pfam
           profile: PF02560 cyanate lyase C-terminal domain
          Length = 168

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/69 (23%), Positives = 32/69 (46%)
 Frame = -1

Query: 555 LTSECSYQDPTRPEADASIPALPPICLFQVNSSPWRSHWPSLDDHRNWYCRLQVLILWCR 376
           L  +   +  T P+   ++PAL    +  + S PWRS+ P+L      Y RL   ++   
Sbjct: 42  LRRQAQLKPDTVPKLKEALPALTDELIGDMMSPPWRSYDPNLIQEPTIY-RLNEAVMHFG 100

Query: 375 KPVRSVCRD 349
           + ++ +  +
Sbjct: 101 ESIKEIINE 109


>At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 691

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
 Frame = +3

Query: 198 SRVSPTPSXIFTTLSLGTGKWGEGRSSGLWERATKGLFGK---GGYNREFFNDDRGKLTG 368
           +RVS  P   F    +GTG   EGR +    +A +G   +   GGY+ +F    RG+ + 
Sbjct: 154 TRVSQ-PGRSFEENGVGTGSSVEGRRASCKRKALEGSISQSSSGGYH-DF---QRGESSS 208

Query: 369 QAYGTRVLGPGGDSTSYGGRLD 434
              G+ V  P G+  +  G LD
Sbjct: 209 WTPGSTVFRP-GNGLNISGSLD 229


>At5g36190.1 68418.m04363 hypothetical protein similar to unknown
           protein (gb|AAD08947.1)
          Length = 145

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 141 RSRIQGMQRITTPLEYILNCDSFAARDKNVK-NSLRNXPI 25
           R+ I G QR   P  +   CD +A   +N K NSLRN  I
Sbjct: 30  RTLILGKQRWIKPRNFYQFCDKYAIGYENKKNNSLRNHKI 69


>At3g13500.1 68416.m01698 hypothetical protein
          Length = 110

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 61  VSSSETVTIQNVFQ-GCCYPLHSLYA*TLKFLCLLVT 168
           V SSE +  Q + +  CC PL  L+    +FLC  V+
Sbjct: 18  VPSSELMNTQQLMEVACCLPLSHLFICLWEFLCFSVS 54


>At1g15840.1 68414.m01901 expressed protein
          Length = 126

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 21/61 (34%), Positives = 22/61 (36%)
 Frame = +3

Query: 246 GTGKWGEGRSSGLWERATKGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGPGGDSTSYGG 425
           G GK   G   G     T G  G GG +      D     G   G    G GGD T  GG
Sbjct: 32  GEGKKKNGGGEGGGGEGTSGEGGGGGGDGTKGGGDGISGGGHGDGLGCSGGGGDGTKGGG 91

Query: 426 R 428
           R
Sbjct: 92  R 92


>At4g23720.1 68417.m03413 expressed protein ; expression supported
           by MPSS
          Length = 294

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -1

Query: 519 PEADASIPALPPICLFQVNSSPWRSHWPSLDDHRNWYCRLQVLILWCRKPVRSVCRD 349
           PE   S+P    + +   N   W +HW ++ D+      ++ +IL  + PV    RD
Sbjct: 103 PERSVSVPPARRVVIVYQNLGNWSNHWYTVPDN------VKEIILKMKNPVEVSFRD 153


>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
           contains Pfam PF01422: NF-X1 type zinc finger; similar
           to transcriptional repressor NF-X1 (SP:Q12986) [Homo
           sapiens]; similar to EST gb|T21002
          Length = 1188

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 54  HSCLEQRNCHNSKCIPRVLLSAAFLVCVNAQVSMPPGYAEKYPITS 191
           HSC  +  CH+  C P + +    L C   + S+PP  +   P+ S
Sbjct: 614 HSC--ESLCHSGHCPPCLEMIFTDLTCACGRTSIPPPLSCGTPVPS 657


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,192,090
Number of Sequences: 28952
Number of extensions: 343815
Number of successful extensions: 1014
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)