Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H04
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    28   2.1  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    27   3.6  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    27   3.6  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    27   4.8  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    26   8.4  

>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +3

Query: 579  EVFSYVHEINPKFILGPLLSFSLDSETQSQLGKLLNNIAVSLQEVFE 719
            + + ++H IN  F+L  LLS SL +   SQ  KLL  +++  +++ E
Sbjct: 878  KTYGHLHYIN--FVLEKLLSSSLLTYNSSQRDKLLYEVSLLFKDLQE 922


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 528 LEFHSQLPMRHFLQLALWLSYC 463
           LEF+S L  RHF+ L L   +C
Sbjct: 199 LEFNSWLVFRHFVDLILMCDFC 220


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +3

Query: 540 VFPSISDLQLSNAEVFSYVHEINPKFILGPLLSFSLDSETQSQLGKLLNNIAVSLQEVFE 719
           +F  I+DLQ+ NAE+   V+E         +   SL +E + +L   L  + + L++  E
Sbjct: 718 LFREINDLQIQNAEMKEQVYEKESTISQKEVEITSLRNE-KDRLSTRLQQVLLELEKQHE 776

Query: 720 AQE 728
             E
Sbjct: 777 TNE 779


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = -1

Query: 317 KLLFGISTSVVT*R*WILVQVPLLIDIENFLRNIHECSSSRSSXQGLLMFFGXIGRIQVR 138
           K LF  ST++V  + W LV  P ++ + N +  I   +        +LMFF  + R  V 
Sbjct: 176 KSLFKFSTNLVKFQ-WFLVPEPQMLQLVNSVVQICNHARLEDVVTEVLMFFDSMIRYSVI 234

Query: 137 SKSN 126
            K++
Sbjct: 235 PKAS 238


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 570 SNAEVFSYVHEINPKFILGPLLSFSLDS 653
           +N  + S V  +NP  ++ PLL  SLD+
Sbjct: 44  TNRIMLSVVSSLNPDSLIAPLLCVSLDN 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,924,241
Number of Sequences: 5004
Number of extensions: 53216
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)