Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_H04
         (896 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57638| Best HMM Match : F5_F8_type_C (HMM E-Value=1.7e-11)          30   2.9  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_54800| Best HMM Match : zf-A20 (HMM E-Value=6.6)                    28   8.9  
SB_43499| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_57638| Best HMM Match : F5_F8_type_C (HMM E-Value=1.7e-11)
          Length = 502

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 316 LTVEYHDVKTRGFDTIKIIEFYINSKTEKLVLAAEVQSLKLASPK 450
           +T  +  V ++  +     EF+  SK EK++LA +  +LKL  PK
Sbjct: 11  ITTNFLSVFSKTHEVEWSTEFFQRSKNEKVLLALQEDTLKLKCPK 55


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
 Frame = +3

Query: 444  AENNF--QYNRKAKEP---IVRSDALEVDYGTLTFTAVFPSISDLQLSNAEVFSYVHEIN 608
            AEN F  +++  A  P    + S + E+D  +      FP++S+ ++S + VFS +  +N
Sbjct: 3864 AENGFSTEHSSAASSPDTQYIMSSSPEIDASSKPKNLSFPALSNREISESPVFSPLAPVN 3923

Query: 609  PK 614
             K
Sbjct: 3924 IK 3925


>SB_54800| Best HMM Match : zf-A20 (HMM E-Value=6.6)
          Length = 86

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 134 WSALGSGRXTQKTSKAPXPNFDLNCIREYFSRNSQC 241
           W+A G+G    KTSK   P   ++   ++  R+S C
Sbjct: 42  WTAWGNGLRVAKTSKGQKPGCPVHVPAQHADRSSVC 77


>SB_43499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 134 WSALGSGRXTQKTSKAPXPNFDLNCIREYFSRNSQC 241
           W+A G+G    KTSK   P   ++   ++  R+S C
Sbjct: 312 WTAWGNGLRVAKTSKGQKPGCPVHVPAQHADRSSVC 347


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,621,094
Number of Sequences: 59808
Number of extensions: 352059
Number of successful extensions: 773
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)