BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_G24 (911 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 06_01_0507 + 3655570-3655573,3655648-3655832 64 1e-10 04_04_0165 + 23247265-23247472,23248115-23248407,23249182-232492... 34 0.18 06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376... 30 2.9 02_02_0664 - 12747888-12747900,12748161-12748229,12748332-127483... 30 2.9 >06_01_0507 + 3655570-3655573,3655648-3655832 Length = 62 Score = 64.1 bits (149), Expect = 1e-10 Identities = 30/44 (68%), Positives = 33/44 (75%) Frame = +1 Query: 310 GKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFV 441 GKVHGSLARAGKV+GQTPKV GRA +R+QYNRRFV Sbjct: 2 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFV 45 >04_04_0165 + 23247265-23247472,23248115-23248407,23249182-23249239, 23249302-23250014 Length = 423 Score = 33.9 bits (74), Expect = 0.18 Identities = 16/40 (40%), Positives = 22/40 (55%) Frame = +3 Query: 117 RAIDTRPGRQWPGVHWSDQGTHSYSCCSW**RPYSIIMWS 236 +A+ RP PG+HW++Q YS CS P I MW+ Sbjct: 368 KAMSMRPDAH-PGIHWNNQWMRGYSDCSHWCLPGPIDMWN 406 >06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820, 3764013-3764961,3766967-3767064,3768144-3768284, 3768758-3768874,3768924-3769013,3769014-3771818 Length = 1632 Score = 29.9 bits (64), Expect = 2.9 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = -3 Query: 195 SKSTNAFLDLTNGLLAIDVQDVCRLPSDMQLHXC 94 S + N+ LD T+ ++ D Q+V LP D H C Sbjct: 1455 SANKNSLLDQTSENVSTDHQEVSMLPQDQHYHSC 1488 >02_02_0664 - 12747888-12747900,12748161-12748229,12748332-12748395, 12749540-12749558,12749777-12749843,12749934-12749953, 12750079-12750248,12751646-12751823 Length = 199 Score = 29.9 bits (64), Expect = 2.9 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = +3 Query: 141 RQWPGVHWSDQGTHSY 188 R WPG+HWSD T Y Sbjct: 51 RIWPGLHWSDSSTPLY 66 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,162,899 Number of Sequences: 37544 Number of extensions: 279767 Number of successful extensions: 545 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 531 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 545 length of database: 14,793,348 effective HSP length: 82 effective length of database: 11,714,740 effective search space used: 2588957540 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -