Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G24
         (911 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)           68   1e-11
SB_12835| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  

>SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)
          Length = 61

 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 32/43 (74%), Positives = 34/43 (79%)
 Frame = +1

Query: 313 KVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFV 441
           KVHGSLARAGKVK QTPKV+        TGRAKRR+QYNRRFV
Sbjct: 2   KVHGSLARAGKVKSQTPKVDAQEKKKKKTGRAKRRMQYNRRFV 44



 Score = 36.7 bits (81), Expect = 0.026
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = +2

Query: 443 NVVQTFGRRRGPNSNS 490
           NVVQTFGRRRGPNSN+
Sbjct: 45  NVVQTFGRRRGPNSNA 60


>SB_12835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 149 PLTSRTCVDCPLICNCIXVKXLSNPSLTSQNSLXGSS 39
           P  +RTC DC  I   + V+   +P LTS NS  GS+
Sbjct: 246 PADARTCRDCSAITLNLPVQLALSP-LTSMNSTTGSA 281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,569,530
Number of Sequences: 59808
Number of extensions: 310301
Number of successful extensions: 653
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2633701421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)