BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_G22 (1034 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_04_0193 + 18344984-18345946 31 1.5 06_01_0638 + 4640218-4640808 31 2.0 04_03_1017 + 21747044-21748051 30 2.6 >03_04_0193 + 18344984-18345946 Length = 320 Score = 31.1 bits (67), Expect = 1.5 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%) Frame = +2 Query: 461 TPPAASGXFRACRAKPGYSASXPKGG*LRFIHQKSXGI-TQEKNHVEPKRASQKARKPVK 637 T +ASG ++ S+S R QKS T +++ K AS A P + Sbjct: 92 TASSASGFSSRSDSRSASSSSSSSSCVSRSTSQKSASSDTAGRSNQPSKAASSDALLPPR 151 Query: 638 KAXFAGRFFHRAPPPLNEPSQK 703 + +G F+ P P PSQ+ Sbjct: 152 RRPLSGSLFYAHPSPSPRPSQR 173 >06_01_0638 + 4640218-4640808 Length = 196 Score = 30.7 bits (66), Expect = 2.0 Identities = 20/60 (33%), Positives = 24/60 (40%) Frame = -1 Query: 548 TVITRPLEXRLNNPASPGKPETXPRRQAEFXVEXGRKSRERGGPQITPKTRPFSPRRRFG 369 T T P L + PGKP + P R+ F R RE+ P TR R R G Sbjct: 113 TQSTTPARKGLAVASPPGKPLSTPGRKRNFVAGDWRGGREKERGNNFPPTRARQRRPRLG 172 >04_03_1017 + 21747044-21748051 Length = 335 Score = 30.3 bits (65), Expect = 2.6 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Frame = -1 Query: 506 ASPG-KPETXPRRQAEFXVEXGRKSRERGGPQITPKTRPFSPRRRFGPEFSI*NAKKKKP 330 ASP PE+ PRR A R P TP++ PRR P++S + ++ Sbjct: 74 ASPDYTPESPPRRAASPDYSPASPPRRAASPDYTPES---PPRRAASPDYSPESPPRRAA 130 Query: 329 FP-HQPSPP 306 P + P+ P Sbjct: 131 SPDYTPASP 139 Score = 29.9 bits (64), Expect = 3.5 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Frame = -1 Query: 506 ASPG-KPETXPRRQAEFXVEXGRKSRERGGPQITPKTRPFSPRRRFGPEFS 357 ASP PE+ PRR A SR P TP++ PRR P+++ Sbjct: 116 ASPDYSPESPPRRAASPDYTPASPSRRAASPDYTPES---PPRRAASPDYT 163 Score = 28.7 bits (61), Expect = 8.0 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 3/70 (4%) Frame = -1 Query: 506 ASPG-KPETXPRRQAEFXVEXGRKSRERGGPQITPKTRPFSPRRRFGPEFSI*NAKKKKP 330 ASP P T PRR A R P +P T PRR P+++ + ++ Sbjct: 189 ASPDYSPSTPPRRAASPDYSPSTPPRRAASPDYSPST---PPRRAASPDYTPMSPPRRAA 245 Query: 329 FPH--QPSPP 306 P Q +PP Sbjct: 246 SPDYTQMTPP 255 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 25,517,393 Number of Sequences: 37544 Number of extensions: 529097 Number of successful extensions: 1270 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1217 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1267 length of database: 14,793,348 effective HSP length: 83 effective length of database: 11,677,196 effective search space used: 3047748156 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -