Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G21
         (903 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF136170-1|AAP97260.1|   63|Homo sapiens cytochrome c oxidase VI...    59   2e-08
X16560-1|CAA34559.1|   63|Homo sapiens protein ( Human COX VIIc ...    54   7e-07
BT007098-1|AAP35762.1|   63|Homo sapiens cytochrome c oxidase su...    54   7e-07
BC007498-1|AAH07498.1|   63|Homo sapiens cytochrome c oxidase su...    54   7e-07
BC001005-1|AAH01005.1|   63|Homo sapiens cytochrome c oxidase su...    54   7e-07
AF067639-1|AAC73062.1|   63|Homo sapiens cytochrome c oxidase su...    54   7e-07

>AF136170-1|AAP97260.1|   63|Homo sapiens cytochrome c oxidase VIIc
           protein.
          Length = 63

 Score = 58.8 bits (136), Expect = 2e-08
 Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
 Frame = +3

Query: 144 RNVVTNFVR-NHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITRHQLLKK 314
           R   T+ VR +H   G PG+NLPF + N+++L     +Y GSG +AP+ I RHQLLKK
Sbjct: 7   RRFTTSVVRRSHYEEG-PGKNLPFSVENKWRLLAMMTVYFGSGFAAPFFIVRHQLLKK 63


>X16560-1|CAA34559.1|   63|Homo sapiens protein ( Human COX VIIc
           gene for subunit VIIc of cytochrome c oxidase (EC
           1.9.3.1).  ).
          Length = 63

 Score = 54.0 bits (124), Expect = 7e-07
 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +3

Query: 144 RNVVTNFVR-NHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITRHQLLK 311
           R   T+ VR +H   G PG+NLPF + N++ L     LY GS  + P+L+ RHQLLK
Sbjct: 7   RRFTTSVVRRSHYEEG-PGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQLLK 62


>BT007098-1|AAP35762.1|   63|Homo sapiens cytochrome c oxidase
           subunit VIIc protein.
          Length = 63

 Score = 54.0 bits (124), Expect = 7e-07
 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +3

Query: 144 RNVVTNFVR-NHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITRHQLLK 311
           R   T+ VR +H   G PG+NLPF + N++ L     LY GS  + P+L+ RHQLLK
Sbjct: 7   RRFTTSVVRRSHYEEG-PGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQLLK 62


>BC007498-1|AAH07498.1|   63|Homo sapiens cytochrome c oxidase
           subunit VIIc protein.
          Length = 63

 Score = 54.0 bits (124), Expect = 7e-07
 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +3

Query: 144 RNVVTNFVR-NHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITRHQLLK 311
           R   T+ VR +H   G PG+NLPF + N++ L     LY GS  + P+L+ RHQLLK
Sbjct: 7   RRFTTSVVRRSHYEEG-PGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQLLK 62


>BC001005-1|AAH01005.1|   63|Homo sapiens cytochrome c oxidase
           subunit VIIc protein.
          Length = 63

 Score = 54.0 bits (124), Expect = 7e-07
 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +3

Query: 144 RNVVTNFVR-NHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITRHQLLK 311
           R   T+ VR +H   G PG+NLPF + N++ L     LY GS  + P+L+ RHQLLK
Sbjct: 7   RRFTTSVVRRSHYEEG-PGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQLLK 62


>AF067639-1|AAC73062.1|   63|Homo sapiens cytochrome c oxidase
           subunit VIIc precursor protein.
          Length = 63

 Score = 54.0 bits (124), Expect = 7e-07
 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +3

Query: 144 RNVVTNFVR-NHSNGGIPGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITRHQLLK 311
           R   T+ VR +H   G PG+NLPF + N++ L     LY GS  + P+L+ RHQLLK
Sbjct: 7   RRFTTSVVRRSHYEEG-PGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQLLK 62


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,999,382
Number of Sequences: 237096
Number of extensions: 1492250
Number of successful extensions: 2200
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2200
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11659288620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)