Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G20
         (872 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184...    31   0.91 
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    28   8.5  
02_05_0686 - 30900748-30902167,30903442-30904742                       28   8.5  

>04_01_0162 +
           1845295-1846317,1846430-1846565,1848436-1848626,
           1848780-1848887,1849001-1849204,1849294-1849525,
           1849602-1849751,1849830-1850007,1850416-1850519,
           1850611-1850933,1851274-1851459,1851672-1851899
          Length = 1020

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = -1

Query: 533 PVXXGGXKXXPPPXXPGGXWPXXKSPFXXFXXPPPXP 423
           P    G +  PPP  P G  P  + PF     PP  P
Sbjct: 65  PAAIAGYRGPPPPQRPFGAGPPQQGPFAAAAPPPQGP 101


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = -2

Query: 520  GVXKXXPPPGXRGGIGXXLKAPXXFXXXPPPXRXXGXPXP 401
            GV    PPP   GG+G     P       PP    G P P
Sbjct: 1181 GVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPP 1220


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/45 (35%), Positives = 17/45 (37%)
 Frame = +3

Query: 240 PPPPPXKGXXXXFFXXXXXGXXXPPGFXKXXPPXNPPXXXXXKXP 374
           PPPPP KG               PPG  K  PP  PP     + P
Sbjct: 354 PPPPPPKGPSPP--------PPPPPGGKKGGPPPPPPKGGASRPP 390


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,329,974
Number of Sequences: 37544
Number of extensions: 361845
Number of successful extensions: 686
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)