BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_G20 (872 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 34 0.13 SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1 SB_812| Best HMM Match : FH2 (HMM E-Value=0) 30 2.1 SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1 SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 28 8.7 >SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) Length = 768 Score = 34.3 bits (75), Expect = 0.13 Identities = 15/36 (41%), Positives = 15/36 (41%) Frame = -1 Query: 521 GGXKXXPPPXXPGGXWPXXKSPFXXFXXPPPXPKXG 414 GG PPP PGG P P PPP P G Sbjct: 673 GGAPPPPPPPLPGGAAPPPPPPIGGGAPPPPPPGFG 708 >SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1000 Score = 30.3 bits (65), Expect = 2.1 Identities = 16/40 (40%), Positives = 16/40 (40%) Frame = -1 Query: 533 PVXXGGXKXXPPPXXPGGXWPXXKSPFXXFXXPPPXPKXG 414 P GG PPP PGG P P PPP P G Sbjct: 923 PPPPGGNAPLPPPP-PGGSAPSQPPPPGGNAPPPPPPPGG 961 >SB_812| Best HMM Match : FH2 (HMM E-Value=0) Length = 1430 Score = 30.3 bits (65), Expect = 2.1 Identities = 14/34 (41%), Positives = 14/34 (41%) Frame = -1 Query: 557 PXFXGGXXPVXXGGXKXXPPPXXPGGXWPXXKSP 456 P F G P GG PPP PGG P P Sbjct: 647 PFFGGIPPPPPGGGMFPPPPPPPPGGGVPGPPKP 680 >SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 964 Score = 30.3 bits (65), Expect = 2.1 Identities = 34/127 (26%), Positives = 39/127 (30%), Gaps = 3/127 (2%) Frame = +2 Query: 176 PXXXKGGXXPKKKXXGXXXXXAPPPPX*GXXX--PIFXXXXXGGXXXPGVXKXXPPPKPP 349 P +GG P G PPPP G P GG PG + PP P Sbjct: 495 PGAGQGGGPPPP---GAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGGPPPPG 551 Query: 350 XXXXXKKXPXGXKXXXXGXXXPXXSXXGGXXXKXXRGF*XXANXPPGXXGGGXFXNP-PX 526 + P G G P + GG G PPG GG P Sbjct: 552 AGQGWGQPPPG--AGQGGGPPPPGAGQGGPPPP---GAGQEGPPPPGAGQGGGPPPPGAG 606 Query: 527 KXXGXPP 547 + G PP Sbjct: 607 QGWGLPP 613 Score = 29.9 bits (64), Expect = 2.8 Identities = 18/48 (37%), Positives = 18/48 (37%) Frame = +1 Query: 415 PXFGXGGGXXKXXKGLLXXGQXPPGXXGGGXXFXPPXKTGXXPPXKXG 558 P G GGG G GQ PPG GG P G PP G Sbjct: 539 PGAGQGGGPPPPGAGQ-GWGQPPPGAGQGGGPPPPGAGQGGPPPPGAG 585 Score = 29.1 bits (62), Expect = 5.0 Identities = 27/103 (26%), Positives = 29/103 (28%) Frame = -2 Query: 547 GGGSXXFXXGVXKXXPPPGXRGGIGXXLKAPXXFXXXPPPXRXXGXPXPXXXPFXXPXGF 368 GGG G PPPG G G PPP G P P G+ Sbjct: 500 GGGPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGGPP---PPGAGQGW 556 Query: 367 FXXXXXGGFXGGXXFXNPGGXXXPXXXXXKNXXXXPLXGGGGG 239 G GG G P + P G GGG Sbjct: 557 GQPPPGAGQGGGPPPPGAGQGGPPPPGAGQEGPPPPGAGQGGG 599 Score = 29.1 bits (62), Expect = 5.0 Identities = 17/44 (38%), Positives = 17/44 (38%) Frame = +1 Query: 415 PXFGXGGGXXKXXKGLLXXGQXPPGXXGGGXXFXPPXKTGXXPP 546 P G GGG G GQ PPG GG P G PP Sbjct: 506 PGAGQGGGPPPPGAG-QGWGQPPPGAGQGGGPPPPGAGQGGGPP 548 >SB_59302| Best HMM Match : Collagen (HMM E-Value=0) Length = 993 Score = 28.3 bits (60), Expect = 8.7 Identities = 22/87 (25%), Positives = 23/87 (26%), Gaps = 1/87 (1%) Frame = +3 Query: 240 PPPPPXKGXXXXFFXXXXXGXXXPPGFXKXXPPXNPPXXXXXKXPXGXKXG-XXXGXGNP 416 P PP G G PPG P PP K P G G P Sbjct: 604 PGPPGVNGPPGEIGEIGPAGLPGPPGPASPPSPPGPPGPPGPKGPPGPNGPLGPPGESGP 663 Query: 417 XFRXGGGXXKXXKGAFXXXPXPPRXPG 497 GG + G P PG Sbjct: 664 AGNAGGVGYQGNHGNPAGVQGPNGQPG 690 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,939,013 Number of Sequences: 59808 Number of extensions: 221851 Number of successful extensions: 447 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 178 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 386 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2503194881 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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