Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G20
         (872 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)                 34   0.13 
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_812| Best HMM Match : FH2 (HMM E-Value=0)                           30   2.1  
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_59302| Best HMM Match : Collagen (HMM E-Value=0)                    28   8.7  

>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
          Length = 768

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -1

Query: 521 GGXKXXPPPXXPGGXWPXXKSPFXXFXXPPPXPKXG 414
           GG    PPP  PGG  P    P      PPP P  G
Sbjct: 673 GGAPPPPPPPLPGGAAPPPPPPIGGGAPPPPPPGFG 708


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/40 (40%), Positives = 16/40 (40%)
 Frame = -1

Query: 533  PVXXGGXKXXPPPXXPGGXWPXXKSPFXXFXXPPPXPKXG 414
            P   GG    PPP  PGG  P    P      PPP P  G
Sbjct: 923  PPPPGGNAPLPPPP-PGGSAPSQPPPPGGNAPPPPPPPGG 961


>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1430

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = -1

Query: 557 PXFXGGXXPVXXGGXKXXPPPXXPGGXWPXXKSP 456
           P F G   P   GG    PPP  PGG  P    P
Sbjct: 647 PFFGGIPPPPPGGGMFPPPPPPPPGGGVPGPPKP 680


>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 34/127 (26%), Positives = 39/127 (30%), Gaps = 3/127 (2%)
 Frame = +2

Query: 176 PXXXKGGXXPKKKXXGXXXXXAPPPPX*GXXX--PIFXXXXXGGXXXPGVXKXXPPPKPP 349
           P   +GG  P     G      PPPP  G     P       GG   PG  +   PP P 
Sbjct: 495 PGAGQGGGPPPP---GAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGGPPPPG 551

Query: 350 XXXXXKKXPXGXKXXXXGXXXPXXSXXGGXXXKXXRGF*XXANXPPGXXGGGXFXNP-PX 526
                 + P G      G   P  +  GG       G       PPG   GG    P   
Sbjct: 552 AGQGWGQPPPG--AGQGGGPPPPGAGQGGPPPP---GAGQEGPPPPGAGQGGGPPPPGAG 606

Query: 527 KXXGXPP 547
           +  G PP
Sbjct: 607 QGWGLPP 613



 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/48 (37%), Positives = 18/48 (37%)
 Frame = +1

Query: 415 PXFGXGGGXXKXXKGLLXXGQXPPGXXGGGXXFXPPXKTGXXPPXKXG 558
           P  G GGG      G    GQ PPG   GG    P    G  PP   G
Sbjct: 539 PGAGQGGGPPPPGAGQ-GWGQPPPGAGQGGGPPPPGAGQGGPPPPGAG 585



 Score = 29.1 bits (62), Expect = 5.0
 Identities = 27/103 (26%), Positives = 29/103 (28%)
 Frame = -2

Query: 547 GGGSXXFXXGVXKXXPPPGXRGGIGXXLKAPXXFXXXPPPXRXXGXPXPXXXPFXXPXGF 368
           GGG      G     PPPG   G G            PPP    G   P   P     G+
Sbjct: 500 GGGPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGGPP---PPGAGQGW 556

Query: 367 FXXXXXGGFXGGXXFXNPGGXXXPXXXXXKNXXXXPLXGGGGG 239
                  G  GG      G    P     +     P  G GGG
Sbjct: 557 GQPPPGAGQGGGPPPPGAGQGGPPPPGAGQEGPPPPGAGQGGG 599



 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/44 (38%), Positives = 17/44 (38%)
 Frame = +1

Query: 415 PXFGXGGGXXKXXKGLLXXGQXPPGXXGGGXXFXPPXKTGXXPP 546
           P  G GGG      G    GQ PPG   GG    P    G  PP
Sbjct: 506 PGAGQGGGPPPPGAG-QGWGQPPPGAGQGGGPPPPGAGQGGGPP 548


>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 993

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 22/87 (25%), Positives = 23/87 (26%), Gaps = 1/87 (1%)
 Frame = +3

Query: 240 PPPPPXKGXXXXFFXXXXXGXXXPPGFXKXXPPXNPPXXXXXKXPXGXKXG-XXXGXGNP 416
           P PP   G           G   PPG      P  PP     K P G        G   P
Sbjct: 604 PGPPGVNGPPGEIGEIGPAGLPGPPGPASPPSPPGPPGPPGPKGPPGPNGPLGPPGESGP 663

Query: 417 XFRXGGGXXKXXKGAFXXXPXPPRXPG 497
               GG   +   G       P   PG
Sbjct: 664 AGNAGGVGYQGNHGNPAGVQGPNGQPG 690


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,939,013
Number of Sequences: 59808
Number of extensions: 221851
Number of successful extensions: 447
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)