Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_G20
(872 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.62
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.62
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.62
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.4
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.4
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.4
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.5
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 29 5.7
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 29 5.7
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.9 bits (69), Expect = 0.62
Identities = 21/62 (33%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Frame = -1
Query: 590 GPFXPLXXGXXPXFXGGXXPVXXGGXKXXPPPXXPGGXWPXXKSP--FXXFXXPPPXPKX 417
G P+ G P G P GG PPP PGG P P PPP P
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPP--PGGCPPPPPPPPPGGFKGGPPPPPPP 790
Query: 416 GV 411
G+
Sbjct: 791 GM 792
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.9 bits (69), Expect = 0.62
Identities = 21/62 (33%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Frame = -1
Query: 590 GPFXPLXXGXXPXFXGGXXPVXXGGXKXXPPPXXPGGXWPXXKSP--FXXFXXPPPXPKX 417
G P+ G P G P GG PPP PGG P P PPP P
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPP--PGGCPPPPPPPPPGGFKGGPPPPPPP 790
Query: 416 GV 411
G+
Sbjct: 791 GM 792
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.9 bits (69), Expect = 0.62
Identities = 21/62 (33%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Frame = -1
Query: 590 GPFXPLXXGXXPXFXGGXXPVXXGGXKXXPPPXXPGGXWPXXKSP--FXXFXXPPPXPKX 417
G P+ G P G P GG PPP PGG P P PPP P
Sbjct: 316 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPP--PGGCPPPPPPPPPGGFKGGPPPPPPP 373
Query: 416 GV 411
G+
Sbjct: 374 GM 375
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.7 bits (66), Expect = 1.4
Identities = 30/116 (25%), Positives = 32/116 (27%)
Frame = +3
Query: 240 PPPPPXKGXXXXFFXXXXXGXXXPPGFXKXXPPXNPPXXXXXKXPXGXKXGXXXGXGNPX 419
PPPPP KG PP PP PP P G+P
Sbjct: 238 PPPPPPKGS--------------PPLAGSGSPP--PPPAAGSPPPPRTGSPPPPPTGSPP 281
Query: 420 FRXGGGXXKXXKGAFXXXPXPPRXPGGGXXFXTPXXNXXXPPPKXGXXPXX*RXKR 587
GG + P PPR P PP G P R KR
Sbjct: 282 PPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKR 337
Score = 28.7 bits (61), Expect = 5.7
Identities = 24/100 (24%), Positives = 28/100 (28%), Gaps = 6/100 (6%)
Frame = -1
Query: 701 GXPPPQGXXXGTPPXXXXXXXXXXXXXXXXXXQXMXKGPFXPLXXGXXPXFXGGXXPVXX 522
G PPP G+PP P P P G P
Sbjct: 235 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA 294
Query: 521 GGXKXXPPP--XXPGGXWPXXKS----PFXXFXXPPPXPK 420
G PPP P G P ++ P PPP P+
Sbjct: 295 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPR 334
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.7 bits (66), Expect = 1.4
Identities = 30/116 (25%), Positives = 32/116 (27%)
Frame = +3
Query: 240 PPPPPXKGXXXXFFXXXXXGXXXPPGFXKXXPPXNPPXXXXXKXPXGXKXGXXXGXGNPX 419
PPPPP KG PP PP PP P G+P
Sbjct: 259 PPPPPPKGS--------------PPLAGSGSPP--PPPAAGSPPPPRTGSPPPPPTGSPP 302
Query: 420 FRXGGGXXKXXKGAFXXXPXPPRXPGGGXXFXTPXXNXXXPPPKXGXXPXX*RXKR 587
GG + P PPR P PP G P R KR
Sbjct: 303 PPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKR 358
Score = 28.7 bits (61), Expect = 5.7
Identities = 24/100 (24%), Positives = 28/100 (28%), Gaps = 6/100 (6%)
Frame = -1
Query: 701 GXPPPQGXXXGTPPXXXXXXXXXXXXXXXXXXQXMXKGPFXPLXXGXXPXFXGGXXPVXX 522
G PPP G+PP P P P G P
Sbjct: 256 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA 315
Query: 521 GGXKXXPPP--XXPGGXWPXXKS----PFXXFXXPPPXPK 420
G PPP P G P ++ P PPP P+
Sbjct: 316 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPR 355
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.7 bits (66), Expect = 1.4
Identities = 30/116 (25%), Positives = 32/116 (27%)
Frame = +3
Query: 240 PPPPPXKGXXXXFFXXXXXGXXXPPGFXKXXPPXNPPXXXXXKXPXGXKXGXXXGXGNPX 419
PPPPP KG PP PP PP P G+P
Sbjct: 244 PPPPPPKGS--------------PPLAGSGSPP--PPPAAGSPPPPRTGSPPPPPTGSPP 287
Query: 420 FRXGGGXXKXXKGAFXXXPXPPRXPGGGXXFXTPXXNXXXPPPKXGXXPXX*RXKR 587
GG + P PPR P PP G P R KR
Sbjct: 288 PPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKR 343
Score = 28.7 bits (61), Expect = 5.7
Identities = 24/100 (24%), Positives = 28/100 (28%), Gaps = 6/100 (6%)
Frame = -1
Query: 701 GXPPPQGXXXGTPPXXXXXXXXXXXXXXXXXXQXMXKGPFXPLXXGXXPXFXGGXXPVXX 522
G PPP G+PP P P P G P
Sbjct: 241 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA 300
Query: 521 GGXKXXPPP--XXPGGXWPXXKS----PFXXFXXPPPXPK 420
G PPP P G P ++ P PPP P+
Sbjct: 301 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPR 340
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.9 bits (64), Expect = 2.5
Identities = 29/106 (27%), Positives = 29/106 (27%)
Frame = +3
Query: 240 PPPPPXKGXXXXFFXXXXXGXXXPPGFXKXXPPXNPPXXXXXKXPXGXKXGXXXGXGNPX 419
PPPPP G PPG PP P P G G P
Sbjct: 287 PPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFG----PPGM--GGMPPPPPPG 340
Query: 420 FRXGGGXXKXXKGAFXXXPXPPRXPGGGXXFXTPXXNXXXPPPKXG 557
R GG P PPR P G P P P G
Sbjct: 341 MRYPGGMPP---------PPPPRYPSAGPGMYPPPPPSRPPAPPSG 377
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 2.5
Identities = 29/106 (27%), Positives = 29/106 (27%)
Frame = +3
Query: 240 PPPPPXKGXXXXFFXXXXXGXXXPPGFXKXXPPXNPPXXXXXKXPXGXKXGXXXGXGNPX 419
PPPPP G PPG PP P P G G P
Sbjct: 297 PPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFG----PPGM--GGMPPPPPPG 350
Query: 420 FRXGGGXXKXXKGAFXXXPXPPRXPGGGXXFXTPXXNXXXPPPKXG 557
R GG P PPR P G P P P G
Sbjct: 351 MRYPGGMPP---------PPPPRYPSAGPGMYPPPPPSRPPAPPSG 387
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 28.7 bits (61), Expect = 5.7
Identities = 23/83 (27%), Positives = 25/83 (30%)
Frame = +3
Query: 309 PPGFXKXXPPXNPPXXXXXKXPXGXKXGXXXGXGNPXFRXGGGXXKXXKGAFXXXPXPPR 488
PPG PP P G G G G P G + +G F PP
Sbjct: 102 PPGMPGGVPPQAQPFNPHG----GSMFGGPGGPGGPP-PFGQPFQQAPQGMFNVPTGPPP 156
Query: 489 XPGGGXXFXTPXXNXXXPPPKXG 557
GGG P PP G
Sbjct: 157 LMGGGGDPRGPPGGMGGPPGHGG 179
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.7 bits (61), Expect = 5.7
Identities = 23/83 (27%), Positives = 25/83 (30%)
Frame = +3
Query: 309 PPGFXKXXPPXNPPXXXXXKXPXGXKXGXXXGXGNPXFRXGGGXXKXXKGAFXXXPXPPR 488
PPG PP P G G G G P G + +G F PP
Sbjct: 382 PPGMPGGVPPQAQPFNPHG----GSMFGGPGGPGGPP-PFGQPFQQAPQGMFNVPTGPPP 436
Query: 489 XPGGGXXFXTPXXNXXXPPPKXG 557
GGG P PP G
Sbjct: 437 LMGGGGDPRGPPGGMGGPPGHGG 459
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,236,836
Number of Sequences: 27780
Number of extensions: 235024
Number of successful extensions: 490
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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