Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G20
         (872 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15000.1 68416.m01897 expressed protein similar to DAG protei...    25   1.7  

>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
           (required for chloroplast differentiation and palisade
           development) GB:Q38732 [Antirrhinum majus]
          Length = 395

 Score = 24.6 bits (51), Expect(2) = 1.7
 Identities = 15/48 (31%), Positives = 16/48 (33%)
 Frame = -1

Query: 557 PXFXGGXXPVXXGGXKXXPPPXXPGGXWPXXKSPFXXFXXPPPXPKXG 414
           P   G   P   GG    PPP   GG  P        +  PPP    G
Sbjct: 246 PPMGGPPPPPHIGGSA--PPPPHMGGSAPPPPHMGQNYGPPPPNNMGG 291



 Score = 24.2 bits (50), Expect(2) = 1.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 719 QKXNXLGXPPPQGXXXGTPP 660
           ++ N  G PPPQ    G PP
Sbjct: 233 RRENMAGGPPPQRPPMGGPP 252


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,791,174
Number of Sequences: 28952
Number of extensions: 207069
Number of successful extensions: 358
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)