Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_G19
(1025 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060 34 0.21
01_05_0490 + 22672241-22674679 31 1.5
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526... 30 3.4
07_03_1136 + 24218601-24218734,24218769-24219906 30 3.4
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 29 4.5
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 29 6.0
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 6.0
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 29 6.0
01_03_0005 + 11568545-11569119,11569179-11569191 29 6.0
>02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060
Length = 794
Score = 33.9 bits (74), Expect = 0.21
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -3
Query: 630 PPPPPXGXGGXXXXXXKXXXXXXXXPPPPP 541
PPPPP G GG + PPPPP
Sbjct: 14 PPPPPFGRGGGGAGYPRGHKQLYAPPPPPP 43
Score = 29.5 bits (63), Expect = 4.5
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -2
Query: 631 PPPPPXXXGGXXXXGXXXXXXXXXXPPPPP 542
PPPPP G G PPPPP
Sbjct: 13 PPPPPPFGRGGGGAGYPRGHKQLYAPPPPP 42
>01_05_0490 + 22672241-22674679
Length = 812
Score = 31.1 bits (67), Expect = 1.5
Identities = 17/65 (26%), Positives = 20/65 (30%)
Frame = -2
Query: 631 PPPPPXXXGGXXXXGXXXXXXXXXXPPPPPHXXXXXXXXKKKXXFFFXXXPPPPFLXXXW 452
PPPPP PPPPP + + + PP P L
Sbjct: 641 PPPPPPPTTRRSRKPPQPPSRPAPPPPPPPQQQPPFYPRRAVVYYTYPLPPPSPPLPPPP 700
Query: 451 VVPPP 437
PPP
Sbjct: 701 PPPPP 705
>08_01_0600 -
5262573-5262773,5262850-5262952,5263050-5263180,
5263263-5263312,5265266-5265725,5266349-5266708
Length = 434
Score = 29.9 bits (64), Expect = 3.4
Identities = 20/72 (27%), Positives = 23/72 (31%)
Frame = -2
Query: 631 PPPPPXXXGGXXXXGXXXXXXXXXXPPPPPHXXXXXXXXKKKXXFFFXXXPPPPFLXXXW 452
PPPPP G G PPP PH + + PPPP +
Sbjct: 3 PPPPPPQAG--VAGGGGAPPQWGAIPPPVPHQQQQYAPPPPQ--MWGQAPPPPPQMWGQA 58
Query: 451 VVPPPXKXXXPP 416
PP PP
Sbjct: 59 PPPPQPAYGQPP 70
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.9 bits (64), Expect = 3.4
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +2
Query: 542 GGGGGXXXXXXXXXXXXXXXPPXPXGGGGG 631
GGGGG PP P GGGGG
Sbjct: 112 GGGGGPPSLPPGAGGGGGARPPAPGGGGGG 141
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 29.5 bits (63), Expect = 4.5
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = -2
Query: 631 PPPPPXXXGGXXXXGXXXXXXXXXXPPPPPH 539
PPPPP G G PPPP H
Sbjct: 129 PPPPPPPFKGDHYGGVYQNWQQNGPPPPPDH 159
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 29.1 bits (62), Expect = 6.0
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 215 KPPXXLNPPXQXLKKGGKXXPPXGPPPGXTP 123
+PP PP K GG PP PPPG P
Sbjct: 924 RPPGAPPPPPPPGKPGGPPPPP--PPPGSLP 952
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.1 bits (62), Expect = 6.0
Identities = 21/72 (29%), Positives = 21/72 (29%)
Frame = -2
Query: 631 PPPPPXXXGGXXXXGXXXXXXXXXXPPPPPHXXXXXXXXKKKXXFFFXXXPPPPFLXXXW 452
PPPPP G PPPPP PPPP L
Sbjct: 544 PPPPPPPP--PPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQP---PPPPPPPPLPNCL 598
Query: 451 VVPPPXKXXXPP 416
V PP PP
Sbjct: 599 VPSPPPPPPPPP 610
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 29.1 bits (62), Expect = 6.0
Identities = 17/55 (30%), Positives = 18/55 (32%)
Frame = -1
Query: 296 GGXXPPXXXSPPPKXXXXFL*XXXXXGKPPXXLNPPXQXLKKGGKXXPPXGPPPG 132
G PP +PPP PP N GG PP GP PG
Sbjct: 645 GPVPPPIAVAPPPAPPIA------GAAPPPPMANGAAAAAPPGGNPAPPAGPQPG 693
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 29.1 bits (62), Expect = 6.0
Identities = 15/54 (27%), Positives = 19/54 (35%)
Frame = -3
Query: 627 PPPPXGXGGXXXXXXKXXXXXXXXPPPPPTXXXXXXXXKKKXFFFFXXPPPPXF 466
PPP G GG + P PPP F++ PPPP +
Sbjct: 114 PPPTGGGGGGGGGWQQGGGGGGAYPTPPPPNPFLPYFP-----FYYYSPPPPFY 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,449,724
Number of Sequences: 37544
Number of extensions: 649628
Number of successful extensions: 1612
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1380
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3012716568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -