BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_G19 (1025 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060 34 0.21 01_05_0490 + 22672241-22674679 31 1.5 08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526... 30 3.4 07_03_1136 + 24218601-24218734,24218769-24219906 30 3.4 01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 29 4.5 11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 29 6.0 10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 6.0 04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 29 6.0 01_03_0005 + 11568545-11569119,11569179-11569191 29 6.0 >02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060 Length = 794 Score = 33.9 bits (74), Expect = 0.21 Identities = 13/30 (43%), Positives = 14/30 (46%) Frame = -3 Query: 630 PPPPPXGXGGXXXXXXKXXXXXXXXPPPPP 541 PPPPP G GG + PPPPP Sbjct: 14 PPPPPFGRGGGGAGYPRGHKQLYAPPPPPP 43 Score = 29.5 bits (63), Expect = 4.5 Identities = 12/30 (40%), Positives = 12/30 (40%) Frame = -2 Query: 631 PPPPPXXXGGXXXXGXXXXXXXXXXPPPPP 542 PPPPP G G PPPPP Sbjct: 13 PPPPPPFGRGGGGAGYPRGHKQLYAPPPPP 42 >01_05_0490 + 22672241-22674679 Length = 812 Score = 31.1 bits (67), Expect = 1.5 Identities = 17/65 (26%), Positives = 20/65 (30%) Frame = -2 Query: 631 PPPPPXXXGGXXXXGXXXXXXXXXXPPPPPHXXXXXXXXKKKXXFFFXXXPPPPFLXXXW 452 PPPPP PPPPP + + + PP P L Sbjct: 641 PPPPPPPTTRRSRKPPQPPSRPAPPPPPPPQQQPPFYPRRAVVYYTYPLPPPSPPLPPPP 700 Query: 451 VVPPP 437 PPP Sbjct: 701 PPPPP 705 >08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180, 5263263-5263312,5265266-5265725,5266349-5266708 Length = 434 Score = 29.9 bits (64), Expect = 3.4 Identities = 20/72 (27%), Positives = 23/72 (31%) Frame = -2 Query: 631 PPPPPXXXGGXXXXGXXXXXXXXXXPPPPPHXXXXXXXXKKKXXFFFXXXPPPPFLXXXW 452 PPPPP G G PPP PH + + PPPP + Sbjct: 3 PPPPPPQAG--VAGGGGAPPQWGAIPPPVPHQQQQYAPPPPQ--MWGQAPPPPPQMWGQA 58 Query: 451 VVPPPXKXXXPP 416 PP PP Sbjct: 59 PPPPQPAYGQPP 70 >07_03_1136 + 24218601-24218734,24218769-24219906 Length = 423 Score = 29.9 bits (64), Expect = 3.4 Identities = 13/30 (43%), Positives = 13/30 (43%) Frame = +2 Query: 542 GGGGGXXXXXXXXXXXXXXXPPXPXGGGGG 631 GGGGG PP P GGGGG Sbjct: 112 GGGGGPPSLPPGAGGGGGARPPAPGGGGGG 141 >01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593, 7039698-7039768,7040148-7040224,7040380-7040527, 7040973-7041134,7041374-7041694 Length = 597 Score = 29.5 bits (63), Expect = 4.5 Identities = 12/31 (38%), Positives = 12/31 (38%) Frame = -2 Query: 631 PPPPPXXXGGXXXXGXXXXXXXXXXPPPPPH 539 PPPPP G G PPPP H Sbjct: 129 PPPPPPPFKGDHYGGVYQNWQQNGPPPPPDH 159 >11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958, 257038-257169,257297-258589,259133-259837,260465-260549, 260604-260650,260810-260900,261838-262101,262195-262309, 262455-262570,262713-262847,262969-263036,263292-263411 Length = 1235 Score = 29.1 bits (62), Expect = 6.0 Identities = 14/31 (45%), Positives = 15/31 (48%) Frame = -1 Query: 215 KPPXXLNPPXQXLKKGGKXXPPXGPPPGXTP 123 +PP PP K GG PP PPPG P Sbjct: 924 RPPGAPPPPPPPGKPGGPPPPP--PPPGSLP 952 >10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379, 1211452-1211878,1212091-1213219,1213623-1213746, 1214207-1214278,1215480-1215578,1215617-1215640, 1215704-1215745,1215815-1215895,1215983-1216114, 1216115-1216196,1216271-1216365,1218499-1218570, 1218676-1218792,1219379-1219447,1219521-1219587, 1219886-1220025 Length = 1269 Score = 29.1 bits (62), Expect = 6.0 Identities = 21/72 (29%), Positives = 21/72 (29%) Frame = -2 Query: 631 PPPPPXXXGGXXXXGXXXXXXXXXXPPPPPHXXXXXXXXKKKXXFFFXXXPPPPFLXXXW 452 PPPPP G PPPPP PPPP L Sbjct: 544 PPPPPPPP--PPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQP---PPPPPPPPLPNCL 598 Query: 451 VVPPPXKXXXPP 416 V PP PP Sbjct: 599 VPSPPPPPPPPP 610 >04_04_0198 + 23502657-23502900,23505228-23505298,23505690-23505727, 23505905-23507693 Length = 713 Score = 29.1 bits (62), Expect = 6.0 Identities = 17/55 (30%), Positives = 18/55 (32%) Frame = -1 Query: 296 GGXXPPXXXSPPPKXXXXFL*XXXXXGKPPXXLNPPXQXLKKGGKXXPPXGPPPG 132 G PP +PPP PP N GG PP GP PG Sbjct: 645 GPVPPPIAVAPPPAPPIA------GAAPPPPMANGAAAAAPPGGNPAPPAGPQPG 693 >01_03_0005 + 11568545-11569119,11569179-11569191 Length = 195 Score = 29.1 bits (62), Expect = 6.0 Identities = 15/54 (27%), Positives = 19/54 (35%) Frame = -3 Query: 627 PPPPXGXGGXXXXXXKXXXXXXXXPPPPPTXXXXXXXXKKKXFFFFXXPPPPXF 466 PPP G GG + P PPP F++ PPPP + Sbjct: 114 PPPTGGGGGGGGGWQQGGGGGGAYPTPPPPNPFLPYFP-----FYYYSPPPPFY 162 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,449,724 Number of Sequences: 37544 Number of extensions: 649628 Number of successful extensions: 1612 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 839 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1380 length of database: 14,793,348 effective HSP length: 83 effective length of database: 11,677,196 effective search space used: 3012716568 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -