Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G19
         (1025 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         31   2.0  
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)                 30   2.6  
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.0  

>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -3

Query: 630 PPPPPXGXGGXXXXXXKXXXXXXXXPPPPP 541
           PPPPP G  G               PPPPP
Sbjct: 715 PPPPPPGCAGLPPPPPSPQPGCAGLPPPPP 744


>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
          Length = 768

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -3

Query: 630 PPPPPXGXGGXXXXXXKXXXXXXXXPPPPP 541
           PPPPP G  G               PPPPP
Sbjct: 664 PPPPPGGQAGGAPPPPPPPLPGGAAPPPPP 693


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 19/54 (35%), Positives = 20/54 (37%)
 Frame = -1

Query: 284  PPXXXSPPPKXXXXFL*XXXXXGKPPXXLNPPXQXLKKGGKXXPPXGPPPGXTP 123
            PP   +PPP             G PP  L PP      GG   PP  PPP   P
Sbjct: 947  PPGGNAPPPPPPPGGSAPPPGGGAPP--LPPPP-----GGSAPPPPPPPPPPPP 993


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,602,874
Number of Sequences: 59808
Number of extensions: 316681
Number of successful extensions: 453
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3059207394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)