BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_G19 (1025 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_33909| Best HMM Match : FH2 (HMM E-Value=0) 31 2.0 SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 30 2.6 SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.0 >SB_33909| Best HMM Match : FH2 (HMM E-Value=0) Length = 1063 Score = 30.7 bits (66), Expect = 2.0 Identities = 12/30 (40%), Positives = 12/30 (40%) Frame = -3 Query: 630 PPPPPXGXGGXXXXXXKXXXXXXXXPPPPP 541 PPPPP G G PPPPP Sbjct: 715 PPPPPPGCAGLPPPPPSPQPGCAGLPPPPP 744 >SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) Length = 768 Score = 30.3 bits (65), Expect = 2.6 Identities = 12/30 (40%), Positives = 12/30 (40%) Frame = -3 Query: 630 PPPPPXGXGGXXXXXXKXXXXXXXXPPPPP 541 PPPPP G G PPPPP Sbjct: 664 PPPPPGGQAGGAPPPPPPPLPGGAAPPPPP 693 >SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1000 Score = 28.7 bits (61), Expect = 8.0 Identities = 19/54 (35%), Positives = 20/54 (37%) Frame = -1 Query: 284 PPXXXSPPPKXXXXFL*XXXXXGKPPXXLNPPXQXLKKGGKXXPPXGPPPGXTP 123 PP +PPP G PP L PP GG PP PPP P Sbjct: 947 PPGGNAPPPPPPPGGSAPPPGGGAPP--LPPPP-----GGSAPPPPPPPPPPPP 993 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,602,874 Number of Sequences: 59808 Number of extensions: 316681 Number of successful extensions: 453 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 211 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 373 length of database: 16,821,457 effective HSP length: 83 effective length of database: 11,857,393 effective search space used: 3059207394 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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