Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G19
         (1025 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.63 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.63
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -3

Query: 216 ETPXXXKPPXPXXKKGGEXXPPXGAPPXXNP 124
           + P    PP P   +G     P GAPP  NP
Sbjct: 32  QAPQRGSPPNP--SQGPPPGGPPGAPPSQNP 60



 Score = 24.6 bits (51), Expect = 1.5
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -1

Query: 218 GKPPXXLNPPXQXLKKGGKXXPPXGPPPGXTP 123
           G  P     P Q  ++G    P  GPPPG  P
Sbjct: 22  GPQPSPHQSP-QAPQRGSPPNPSQGPPPGGPP 52


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -1

Query: 554 PPPPPXXXGXXXXKKKKXF 498
           PPPPP   G    K  K F
Sbjct: 344 PPPPPSSSGPDSAKLDKIF 362



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -1

Query: 179 LKKGGKXXPPXGPPPGXTP 123
           L  G       GPPPG TP
Sbjct: 372 LLSGRSQKSTTGPPPGPTP 390


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,457
Number of Sequences: 438
Number of extensions: 5582
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34225737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)