BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_G18 (776 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.32 SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.32 SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.43 SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.43 SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.3 SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.0 SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 4.0 SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 23 6.2 SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 23 6.6 SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 22 9.9 >SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 2363 Score = 30.3 bits (65), Expect = 0.32 Identities = 13/25 (52%), Positives = 13/25 (52%) Frame = +3 Query: 576 PPPPPPXKKKXXXFXXAXXPPPPPP 650 PPPPPP F PPPPPP Sbjct: 9 PPPPPPPP----GFEPPSQPPPPPP 29 Score = 29.9 bits (64), Expect = 0.43 Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 2/21 (9%) Frame = +2 Query: 626 PXXPPPPPXXXXP--PPPXPP 682 P PPPPP P PPP PP Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29 Score = 27.9 bits (59), Expect = 1.7 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 6/27 (22%) Frame = +2 Query: 620 LXPXXPPPPP------XXXXPPPPXPP 682 L P PPPPP PPPP PP Sbjct: 4 LPPGNPPPPPPPPGFEPPSQPPPPPPP 30 Score = 27.9 bits (59), Expect = 1.7 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +3 Query: 576 PPPPPPXKKKXXXFXXAXXPPPPPP 650 PPPPPP + + PPPPPP Sbjct: 11 PPPPPPGFEPP-----SQPPPPPPP 30 >SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 273 Score = 30.3 bits (65), Expect = 0.32 Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 1/53 (1%) Frame = -3 Query: 681 GGXGGGGXXXXGGGGGXXGXXKXKXFFFXXGG-GGGGXXXQPXPXXFXGGGXG 526 GG GG GG GG G GG GGG + P F GG G Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246 Score = 27.1 bits (57), Expect = 3.0 Identities = 18/51 (35%), Positives = 18/51 (35%) Frame = -3 Query: 678 GXGGGGXXXXGGGGGXXGXXKXKXFFFXXGGGGGGXXXQPXPXXFXGGGXG 526 G GGG GGG G G F GG GG F GG G Sbjct: 184 GHNGGGFGGFGGGSG--GPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGG 232 >SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF hand and WH2 motif |Schizosaccharomyces pombe|chr 1|||Manual Length = 1794 Score = 29.9 bits (64), Expect = 0.43 Identities = 10/16 (62%), Positives = 10/16 (62%) Frame = +2 Query: 635 PPPPPXXXXPPPPXPP 682 PPPPP PPP PP Sbjct: 1707 PPPPPMSVPPPPSAPP 1722 Score = 25.4 bits (53), Expect = 9.2 Identities = 11/36 (30%), Positives = 13/36 (36%) Frame = +3 Query: 576 PPPPPPXKKKXXXFXXAXXPPPPPPXXXXXPPXXXP 683 P PP + + P PPPP PP P Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAP 1721 >SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||Manual Length = 1461 Score = 29.9 bits (64), Expect = 0.43 Identities = 10/16 (62%), Positives = 10/16 (62%) Frame = +2 Query: 635 PPPPPXXXXPPPPXPP 682 PPP P PPPP PP Sbjct: 752 PPPAPIMGGPPPPPPP 767 Score = 29.9 bits (64), Expect = 0.43 Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 2/21 (9%) Frame = +2 Query: 626 PXXPPPPP--XXXXPPPPXPP 682 P PPPPP PPPP PP Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781 Score = 28.3 bits (60), Expect = 1.3 Identities = 12/29 (41%), Positives = 14/29 (48%) Frame = +3 Query: 564 VVXXPPPPPPXKKKXXXFXXAXXPPPPPP 650 ++ PPPPPP PPPPPP Sbjct: 757 IMGGPPPPPPPPGVAGA--GPPPPPPPPP 783 Score = 27.9 bits (59), Expect = 1.7 Identities = 13/41 (31%), Positives = 14/41 (34%) Frame = +3 Query: 561 VVVXXPPPPPPXKKKXXXFXXAXXPPPPPPXXXXXPPXXXP 683 V+V P P P PPPPPP P P Sbjct: 739 VIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779 Score = 27.9 bits (59), Expect = 1.7 Identities = 14/41 (34%), Positives = 15/41 (36%) Frame = +3 Query: 528 PLPPXXKXXXXVVVXXPPPPPPXKKKXXXFXXAXXPPPPPP 650 P P + PPPPP A PPPPPP Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPP---PPPGVAGAGPPPPPPP 781 >SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 1611 Score = 27.5 bits (58), Expect = 2.3 Identities = 17/51 (33%), Positives = 19/51 (37%) Frame = +3 Query: 531 LPPXXKXXXXVVVXXPPPPPPXKKKXXXFXXAXXPPPPPPXXXXXPPXXXP 683 +PP K V PP PPP + PP PPP PP P Sbjct: 1178 IPPVPKPAAGV----PPVPPPSEAPPVPKPSVGVPPVPPP--STAPPVPTP 1222 Score = 25.4 bits (53), Expect = 9.2 Identities = 14/39 (35%), Positives = 14/39 (35%) Frame = +3 Query: 567 VXXPPPPPPXKKKXXXFXXAXXPPPPPPXXXXXPPXXXP 683 V PP PPP A PP P P PP P Sbjct: 1205 VGVPPVPPPSTAPPVPTPSAGLPPVPVP-TAKAPPVPAP 1242 >SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 574 Score = 27.1 bits (57), Expect = 3.0 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 11/52 (21%) Frame = +3 Query: 528 PLPPXXKXXXXVVVXX----PPPPPPXKKK-------XXXFXXAXXPPPPPP 650 PLPP + PPPPPP ++ + PPPPPP Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342 Score = 26.6 bits (56), Expect = 4.0 Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 2/43 (4%) Frame = +3 Query: 528 PLPPXXKXXXXVVVXXPPPPPPXKKKXXXFXXA--XXPPPPPP 650 P+ P PP PPP + A PPPPPP Sbjct: 274 PIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPP 316 Score = 26.6 bits (56), Expect = 4.0 Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 5/30 (16%) Frame = +3 Query: 576 PPPPPPXKKKXXXF-----XXAXXPPPPPP 650 PPPPPP + PPPPPP Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366 >SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1224 Score = 26.6 bits (56), Expect = 4.0 Identities = 11/31 (35%), Positives = 11/31 (35%) Frame = +3 Query: 579 PPPPPXKKKXXXFXXAXXPPPPPPXXXXXPP 671 PPPPP PPPP PP Sbjct: 908 PPPPPTASMTASAPAIASPPPPKVGETYHPP 938 >SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family |Schizosaccharomyces pombe|chr 1|||Manual Length = 1420 Score = 22.6 bits (46), Expect(2) = 6.2 Identities = 10/24 (41%), Positives = 10/24 (41%) Frame = +3 Query: 576 PPPPPPXKKKXXXFXXAXXPPPPP 647 P PP K A PPPPP Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPP 244 Score = 21.4 bits (43), Expect(2) = 6.2 Identities = 7/13 (53%), Positives = 7/13 (53%) Frame = +3 Query: 633 PPPPPPXXXXXPP 671 P PPPP PP Sbjct: 236 PAPPPPPPPTLPP 248 >SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 713 Score = 23.0 bits (47), Expect(2) = 6.6 Identities = 8/17 (47%), Positives = 8/17 (47%) Frame = +3 Query: 633 PPPPPPXXXXXPPXXXP 683 PPPPPP P P Sbjct: 372 PPPPPPELLNHSPKSRP 388 Score = 21.0 bits (42), Expect(2) = 6.6 Identities = 6/6 (100%), Positives = 6/6 (100%) Frame = +3 Query: 576 PPPPPP 593 PPPPPP Sbjct: 371 PPPPPP 376 >SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1|||Manual Length = 1841 Score = 21.8 bits (44), Expect(2) = 9.9 Identities = 7/9 (77%), Positives = 7/9 (77%) Frame = +3 Query: 624 AXXPPPPPP 650 A PPPPPP Sbjct: 943 AFPPPPPPP 951 Score = 21.4 bits (43), Expect(2) = 9.9 Identities = 7/11 (63%), Positives = 8/11 (72%) Frame = +3 Query: 561 VVVXXPPPPPP 593 V+ PPPPPP Sbjct: 940 VMPAFPPPPPP 950 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,586,926 Number of Sequences: 5004 Number of extensions: 22106 Number of successful extensions: 238 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 141 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 375345278 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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