Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G18
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.32 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.32 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.43 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.43 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.0  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   4.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   6.2  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    23   6.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    22   9.9  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +3

Query: 576 PPPPPPXKKKXXXFXXAXXPPPPPP 650
           PPPPPP       F     PPPPPP
Sbjct: 9   PPPPPPPP----GFEPPSQPPPPPP 29



 Score = 29.9 bits (64), Expect = 0.43
 Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
 Frame = +2

Query: 626 PXXPPPPPXXXXP--PPPXPP 682
           P  PPPPP    P  PPP PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 6/27 (22%)
 Frame = +2

Query: 620 LXPXXPPPPP------XXXXPPPPXPP 682
           L P  PPPPP          PPPP PP
Sbjct: 4   LPPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 576 PPPPPPXKKKXXXFXXAXXPPPPPP 650
           PPPPPP  +       +  PPPPPP
Sbjct: 11  PPPPPPGFEPP-----SQPPPPPPP 30


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
 Frame = -3

Query: 681 GGXGGGGXXXXGGGGGXXGXXKXKXFFFXXGG-GGGGXXXQPXPXXFXGGGXG 526
           GG  GG     GG GG  G           GG GGG    +  P  F GG  G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246



 Score = 27.1 bits (57), Expect = 3.0
 Identities = 18/51 (35%), Positives = 18/51 (35%)
 Frame = -3

Query: 678 GXGGGGXXXXGGGGGXXGXXKXKXFFFXXGGGGGGXXXQPXPXXFXGGGXG 526
           G  GGG    GGG G  G       F   GG GG          F GG  G
Sbjct: 184 GHNGGGFGGFGGGSG--GPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGG 232


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 635  PPPPPXXXXPPPPXPP 682
            PPPPP    PPP  PP
Sbjct: 1707 PPPPPMSVPPPPSAPP 1722



 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/36 (30%), Positives = 13/36 (36%)
 Frame = +3

Query: 576  PPPPPPXKKKXXXFXXAXXPPPPPPXXXXXPPXXXP 683
            P   PP + +         P PPPP     PP   P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAP 1721


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 635 PPPPPXXXXPPPPXPP 682
           PPP P    PPPP PP
Sbjct: 752 PPPAPIMGGPPPPPPP 767



 Score = 29.9 bits (64), Expect = 0.43
 Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
 Frame = +2

Query: 626 PXXPPPPP--XXXXPPPPXPP 682
           P  PPPPP      PPPP PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 564 VVXXPPPPPPXKKKXXXFXXAXXPPPPPP 650
           ++  PPPPPP             PPPPPP
Sbjct: 757 IMGGPPPPPPPPGVAGA--GPPPPPPPPP 783



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/41 (31%), Positives = 14/41 (34%)
 Frame = +3

Query: 561 VVVXXPPPPPPXKKKXXXFXXAXXPPPPPPXXXXXPPXXXP 683
           V+V  P P P              PPPPPP      P   P
Sbjct: 739 VIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/41 (34%), Positives = 15/41 (36%)
 Frame = +3

Query: 528 PLPPXXKXXXXVVVXXPPPPPPXKKKXXXFXXAXXPPPPPP 650
           P P          +   PPPPP          A  PPPPPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPP---PPPGVAGAGPPPPPPP 781


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/51 (33%), Positives = 19/51 (37%)
 Frame = +3

Query: 531  LPPXXKXXXXVVVXXPPPPPPXKKKXXXFXXAXXPPPPPPXXXXXPPXXXP 683
            +PP  K    V    PP PPP +           PP PPP     PP   P
Sbjct: 1178 IPPVPKPAAGV----PPVPPPSEAPPVPKPSVGVPPVPPP--STAPPVPTP 1222



 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = +3

Query: 567  VXXPPPPPPXKKKXXXFXXAXXPPPPPPXXXXXPPXXXP 683
            V  PP PPP          A  PP P P     PP   P
Sbjct: 1205 VGVPPVPPPSTAPPVPTPSAGLPPVPVP-TAKAPPVPAP 1242


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
 Frame = +3

Query: 528 PLPPXXKXXXXVVVXX----PPPPPPXKKK-------XXXFXXAXXPPPPPP 650
           PLPP         +      PPPPPP  ++             +  PPPPPP
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342



 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
 Frame = +3

Query: 528 PLPPXXKXXXXVVVXXPPPPPPXKKKXXXFXXA--XXPPPPPP 650
           P+ P            PP PPP  +       A    PPPPPP
Sbjct: 274 PIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPP 316



 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
 Frame = +3

Query: 576 PPPPPPXKKKXXXF-----XXAXXPPPPPP 650
           PPPPPP +                PPPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +3

Query: 579  PPPPPXKKKXXXFXXAXXPPPPPPXXXXXPP 671
            PPPPP             PPPP       PP
Sbjct: 908  PPPPPTASMTASAPAIASPPPPKVGETYHPP 938


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 22.6 bits (46), Expect(2) = 6.2
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 576 PPPPPPXKKKXXXFXXAXXPPPPP 647
           P  PP    K      A  PPPPP
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPP 244



 Score = 21.4 bits (43), Expect(2) = 6.2
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +3

Query: 633 PPPPPPXXXXXPP 671
           P PPPP     PP
Sbjct: 236 PAPPPPPPPTLPP 248


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 23.0 bits (47), Expect(2) = 6.6
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +3

Query: 633 PPPPPPXXXXXPPXXXP 683
           PPPPPP      P   P
Sbjct: 372 PPPPPPELLNHSPKSRP 388



 Score = 21.0 bits (42), Expect(2) = 6.6
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 576 PPPPPP 593
           PPPPPP
Sbjct: 371 PPPPPP 376


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 21.8 bits (44), Expect(2) = 9.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 624 AXXPPPPPP 650
           A  PPPPPP
Sbjct: 943 AFPPPPPPP 951



 Score = 21.4 bits (43), Expect(2) = 9.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 561 VVVXXPPPPPP 593
           V+   PPPPPP
Sbjct: 940 VMPAFPPPPPP 950


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,586,926
Number of Sequences: 5004
Number of extensions: 22106
Number of successful extensions: 238
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)