Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G17
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    33   0.042
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    32   0.097
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    31   0.30 
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    29   0.90 
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.6  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    27   3.6  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    27   3.6  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   3.6  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    26   6.4  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.4  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    26   6.4  

>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 33.5 bits (73), Expect = 0.042
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +3

Query: 123 MLAASAGVV--ELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSII 278
           ++ A+AG+    LS +  N+D+  K+    L G Y +A      ++ QGKGS+I
Sbjct: 91  VMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 32.3 bits (70), Expect = 0.097
 Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
 Frame = +1

Query: 586 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSADSTREXWF-FQ-PAKYENDVLFFIYNRQF 759
           +++ YN+   M T++C+C+S  +  YGGN A    E  F F+ P + +   +++      
Sbjct: 47  YSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEEFSFHFRGPIELKRFAVYYPDTSNA 105

Query: 760 NDALELGTNRERLGRRKAVGHDGEVXGLPDIY 855
             +L   +N + + R      D  +     +Y
Sbjct: 106 LSSLRKRSNNQHMKRHPHHKRDDVIDSTLTVY 137


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = +3

Query: 270 SIIQNVVNNLIIDKRRNTMEYCYKLWVGNGQEIVRKYFPLNFRLIMAGNYVKIIYRNYNL 449
           +II   V+N I+D+  +  ++C ++W G   + +R ++  N    ++    K IY +   
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFYS-NLYKKLSHRDAKSIYHHVRR 305

Query: 450 A 452
           A
Sbjct: 306 A 306


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 586 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSA 678
           HN  +N + + S T+ +  SR+ V+  GNS+
Sbjct: 617 HNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 248 FQALTDSTVVVAGEDAVVQFLLEVLV 171
           F  +T   V+V  EDAVV+F+L +LV
Sbjct: 181 FLGVTVQYVMVLPEDAVVEFVLTILV 206


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
 Frame = -1

Query: 386 WEVLSNNFLS--VADPQL---VAVLHGVPSLVNDQVVNYILD 276
           W+VL +++L+  ++ P     V  LHGV + VN  V +YI D
Sbjct: 188 WDVLFHDYLNETLSQPAFSFNVPDLHGVDNKVNQYVFDYIKD 229


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = -3

Query: 828 TIVSNGLASPEAFTIRTELQGIVELAIVDEEQDVV-FVLGGLEEPXL 691
           T + NGL+S +  T R ++ G  +L + DEE  VV F+   +++P +
Sbjct: 19  TDMYNGLSSLQEITRRNKVHGDNDLKVEDEENMVVQFLKQFVKDPLI 65


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 171 NQDLEEKLYNSILTGDYDSAVRQSLE 248
           + DLE+ +  ++LTGD  SAV+  LE
Sbjct: 551 DSDLEKNITEALLTGDVLSAVKACLE 576


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 136 ARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAW 246
           AR SLNY ++   + SRRN    ++P      S + W
Sbjct: 622 ARESLNYLKSFNKQLSRRNAPDINNPIADFQNSFQNW 658


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +1

Query: 646 RDRVVYGGNSADSTREXWFFQPAKYENDVLFFIYN 750
           R R+V G ++A  + + W F   +Y   ++F+++N
Sbjct: 162 RQRIVVGKHAAHFSLDHWIF-VVEYYAPIVFYVFN 195


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 273 IIQNVVNNLIIDKRRNTMEYCYKLWVGNGQEIVR 374
           +++++  NL I    N +EY   LW  NG  I +
Sbjct: 447 VLKDIFFNLQIGVTFNILEYLRHLWSNNGDAIAK 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,296,711
Number of Sequences: 5004
Number of extensions: 65416
Number of successful extensions: 208
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)