BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_G17 (902 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 33 0.042 SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 32 0.097 SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 31 0.30 SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 29 0.90 SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.6 SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 27 3.6 SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 27 3.6 SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 3.6 SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 26 6.4 SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.4 SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 26 6.4 >SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr 1|||Manual Length = 255 Score = 33.5 bits (73), Expect = 0.042 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%) Frame = +3 Query: 123 MLAASAGVV--ELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSII 278 ++ A+AG+ LS + N+D+ K+ L G Y +A ++ QGKGS+I Sbjct: 91 VMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144 >SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 507 Score = 32.3 bits (70), Expect = 0.097 Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 2/92 (2%) Frame = +1 Query: 586 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSADSTREXWF-FQ-PAKYENDVLFFIYNRQF 759 +++ YN+ M T++C+C+S + YGGN A E F F+ P + + +++ Sbjct: 47 YSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEEFSFHFRGPIELKRFAVYYPDTSNA 105 Query: 760 NDALELGTNRERLGRRKAVGHDGEVXGLPDIY 855 +L +N + + R D + +Y Sbjct: 106 LSSLRKRSNNQHMKRHPHHKRDDVIDSTLTVY 137 >SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription termination factor Reb1|Schizosaccharomyces pombe|chr 2|||Manual Length = 504 Score = 30.7 bits (66), Expect = 0.30 Identities = 15/61 (24%), Positives = 31/61 (50%) Frame = +3 Query: 270 SIIQNVVNNLIIDKRRNTMEYCYKLWVGNGQEIVRKYFPLNFRLIMAGNYVKIIYRNYNL 449 +II V+N I+D+ + ++C ++W G + +R ++ N ++ K IY + Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFYS-NLYKKLSHRDAKSIYHHVRR 305 Query: 450 A 452 A Sbjct: 306 A 306 >SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 846 Score = 29.1 bits (62), Expect = 0.90 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = +1 Query: 586 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSA 678 HN +N + + S T+ + SR+ V+ GNS+ Sbjct: 617 HNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647 >SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 300 Score = 27.1 bits (57), Expect = 3.6 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = -1 Query: 248 FQALTDSTVVVAGEDAVVQFLLEVLV 171 F +T V+V EDAVV+F+L +LV Sbjct: 181 FLGVTVQYVMVLPEDAVVEFVLTILV 206 >SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Manual Length = 918 Score = 27.1 bits (57), Expect = 3.6 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%) Frame = -1 Query: 386 WEVLSNNFLS--VADPQL---VAVLHGVPSLVNDQVVNYILD 276 W+VL +++L+ ++ P V LHGV + VN V +YI D Sbjct: 188 WDVLFHDYLNETLSQPAFSFNVPDLHGVDNKVNQYVFDYIKD 229 >SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 899 Score = 27.1 bits (57), Expect = 3.6 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Frame = -3 Query: 828 TIVSNGLASPEAFTIRTELQGIVELAIVDEEQDVV-FVLGGLEEPXL 691 T + NGL+S + T R ++ G +L + DEE VV F+ +++P + Sbjct: 19 TDMYNGLSSLQEITRRNKVHGDNDLKVEDEENMVVQFLKQFVKDPLI 65 >SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1224 Score = 27.1 bits (57), Expect = 3.6 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = +3 Query: 171 NQDLEEKLYNSILTGDYDSAVRQSLE 248 + DLE+ + ++LTGD SAV+ LE Sbjct: 551 DSDLEKNITEALLTGDVLSAVKACLE 576 >SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Schizosaccharomyces pombe|chr 1|||Manual Length = 775 Score = 26.2 bits (55), Expect = 6.4 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = +1 Query: 136 ARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAW 246 AR SLNY ++ + SRRN ++P S + W Sbjct: 622 ARESLNYLKSFNKQLSRRNAPDINNPIADFQNSFQNW 658 >SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 394 Score = 26.2 bits (55), Expect = 6.4 Identities = 10/35 (28%), Positives = 21/35 (60%) Frame = +1 Query: 646 RDRVVYGGNSADSTREXWFFQPAKYENDVLFFIYN 750 R R+V G ++A + + W F +Y ++F+++N Sbjct: 162 RQRIVVGKHAAHFSLDHWIF-VVEYYAPIVFYVFN 195 >SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosaccharomyces pombe|chr 2|||Manual Length = 889 Score = 26.2 bits (55), Expect = 6.4 Identities = 11/34 (32%), Positives = 18/34 (52%) Frame = +3 Query: 273 IIQNVVNNLIIDKRRNTMEYCYKLWVGNGQEIVR 374 +++++ NL I N +EY LW NG I + Sbjct: 447 VLKDIFFNLQIGVTFNILEYLRHLWSNNGDAIAK 480 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,296,711 Number of Sequences: 5004 Number of extensions: 65416 Number of successful extensions: 208 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 201 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 208 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 456499320 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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