BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_G17 (902 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24 SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7) 25 2.2 SB_16674| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9 SB_52928| Best HMM Match : PKD (HMM E-Value=0) 29 6.8 >SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 441 Score = 33.5 bits (73), Expect = 0.24 Identities = 20/65 (30%), Positives = 27/65 (41%) Frame = -3 Query: 354 CRPTACSSTPWCSVSCQ*SGC*LHSG*WSPCLGSHIPSSDGQHCRSRR*GCCCTVSPRGL 175 C+ CS++ C SC GC L+ + + C+SR G CT S G Sbjct: 224 CQQVVCSASGKCDQSCDGEGCNLYCSEGAKTCNQKCQGACVTDCKSRWCGVTCTGS--GC 281 Query: 174 G*KCP 160 KCP Sbjct: 282 DVKCP 286 >SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7) Length = 290 Score = 25.4 bits (53), Expect(2) = 2.2 Identities = 8/28 (28%), Positives = 18/28 (64%) Frame = +3 Query: 288 VNNLIIDKRRNTMEYCYKLWVGNGQEIV 371 +++L++ +++ YC+ NGQ+IV Sbjct: 130 IHDLLLSLQKHLFAYCHNATSNNGQDIV 157 Score = 23.4 bits (48), Expect(2) = 2.2 Identities = 14/51 (27%), Positives = 22/51 (43%) Frame = +3 Query: 369 VRKYFPLNFRLIMAGNYVKIIYRNYNLALKLGSTTNPSNERIAYGDGVDKH 521 +R YF L+M+G ++ + +L L S R+ G G D H Sbjct: 183 IRYYFACFQELLMSGPANSLLQSHLSLFLPCAGEILGSVYRLLVGHGSDTH 233 >SB_16674| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 161 Score = 29.5 bits (63), Expect = 3.9 Identities = 17/65 (26%), Positives = 27/65 (41%) Frame = -1 Query: 839 PXTSPSCPTALRLPRRSRFVPSSKASLNWRL*MKNRTSFSYLAGWKNHXSLVLSALLPPY 660 P +SP+ P A PRR+ + K +N + + WK+H V A P Sbjct: 50 PISSPTLPEATADPRRAFSIAQKKLPINAPAICATTDTLRFKVSWKHHGRTVHEAGAVPS 109 Query: 659 TTRSR 645 + +R Sbjct: 110 KSIAR 114 >SB_52928| Best HMM Match : PKD (HMM E-Value=0) Length = 1624 Score = 28.7 bits (61), Expect = 6.8 Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 3/113 (2%) Frame = -2 Query: 415 FPAMMSLKFNGKYFLTISCPLPTHSL*QYSMVFRLLSMIRLLTTFWMMEPLP---WLSYS 245 FPAM +L NG + +++ SL ++ R R L M P+ W S Sbjct: 519 FPAMAALTMNGSHAVSLWSYGDGSSLKKHESGPRQFITSRHLYAHTGMFPVTVTVWNRLS 578 Query: 244 KL*RTALS*SPVRMLLYSFSSRSWLEVSADSSTTPALAASMHIANTTRSFILL 86 K TAL+ V++ + + S S L S +S T + + H T S+ ++ Sbjct: 579 KKNETALAYVSVQVPVTNISVPSDLTASLGNSVTFTVKITSHETPTNASYYII 631 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 25,270,485 Number of Sequences: 59808 Number of extensions: 505607 Number of successful extensions: 1477 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 1351 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1476 length of database: 16,821,457 effective HSP length: 82 effective length of database: 11,917,201 effective search space used: 2597949818 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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