Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G17
         (902 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59210.2 68418.m07421 myosin heavy chain-related contains wea...    32   0.45 
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea...    32   0.45 
At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    32   0.60 
At1g69390.1 68414.m07966 chloroplast division protein, putative ...    30   2.4  
At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A...    28   7.4  
At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A...    28   7.4  
At1g61620.1 68414.m06943 expressed protein contains Pfam profile...    28   7.4  
At1g23770.1 68414.m02999 F-box family protein contains Pfam PF00...    28   9.7  

>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 433

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = +3

Query: 150 ELSADTSNQDLE-EKLY--NSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRR 317
           +L  +  NQ  E EKL+  NS L+  Y  ++  S ++E+Q K  + QNV    ++DK R
Sbjct: 285 KLLMEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 343


>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 434

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = +3

Query: 150 ELSADTSNQDLE-EKLY--NSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRR 317
           +L  +  NQ  E EKL+  NS L+  Y  ++  S ++E+Q K  + QNV    ++DK R
Sbjct: 286 KLLMEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 344


>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 297 LIIDKRRNTMEYCYKLWVGNGQEIVRKYFPLNF 395
           +++D +    EY  KL + +G +   KYFPL F
Sbjct: 386 IVVDTKNLNCEYQLKLMIASGVDAANKYFPLAF 418


>At1g69390.1 68414.m07966 chloroplast division protein, putative
           (MinE1) identical to chloroplast division protein
           homolog MinE1 GI:17511220 from [Arabidopsis thaliana]
          Length = 229

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 123 MLAASAGVVELSADTSNQDLEEKLYNSILTGDYD 224
           +LA + G  ELS   + Q++E  LYN+I  G +D
Sbjct: 70  VLARNTGDYELSPSPAEQEIESFLYNAINMGFFD 103


>At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 390

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 189 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLII 305
           K+ + IL+G  D A     EY  Q K   IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141


>At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 497

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 189 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLII 305
           K+ + IL+G  D A     EY  Q K   IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141


>At1g61620.1 68414.m06943 expressed protein contains Pfam profile:
           PF01363 FYVE zinc finger
          Length = 310

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 712 AKYENDVLFFIYNRQFNDALELGTNRERLGR 804
           +K  ND+ +F Y+ +    L  GT RERLGR
Sbjct: 6   SKNNNDLAYFTYDEK--KKLGYGTQRERLGR 34


>At1g23770.1 68414.m02999 F-box family protein contains Pfam
           PF00646: F-box domain; similar to F-box only protein 7
           (SP:Q9Y3I1) {Homo sapiens} ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 350

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 172 LEVSADSSTTPALAASMHIANTTRSFILLGAFQDRLQVCK 53
           LE S D+S   ALA S+H       F+LL    D+    K
Sbjct: 54  LEKSGDTSDLTALALSVHAVMLESGFVLLDHGSDKFSFSK 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,457,751
Number of Sequences: 28952
Number of extensions: 347751
Number of successful extensions: 916
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)