Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G16
         (918 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49910-1|CAA90118.1|  160|Caenorhabditis elegans Hypothetical pr...    32   0.50 
AF304128-1|AAG50241.1|  160|Caenorhabditis elegans NADH ubiquino...    32   0.50 
U88308-9|AAB42325.1|  933|Caenorhabditis elegans Patched related...    30   2.7  
AL132876-38|CAD21663.2|  224|Caenorhabditis elegans Hypothetical...    29   6.2  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U40942-9|AAC47074.6|  703|Caenorhabditis elegans Synaptogenesis ...    28   8.1  

>Z49910-1|CAA90118.1|  160|Caenorhabditis elegans Hypothetical
           protein F44G4.2 protein.
          Length = 160

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +2

Query: 344 YHIAN*T*AITGEW--PYIDPSTWTDEELGIPPDSA 445
           YH+   +  + G W  PY+  S +TDEELGIP DSA
Sbjct: 110 YHMYYHSGHLLGHWYMPYL--SEFTDEELGIPKDSA 143


>AF304128-1|AAG50241.1|  160|Caenorhabditis elegans NADH ubiquinone
           oxidoreductaseAGGG subunit protein.
          Length = 160

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +2

Query: 344 YHIAN*T*AITGEW--PYIDPSTWTDEELGIPPDSA 445
           YH+   +  + G W  PY+  S +TDEELGIP DSA
Sbjct: 110 YHMYYHSGHLLGHWYMPYL--SEFTDEELGIPKDSA 143


>U88308-9|AAB42325.1|  933|Caenorhabditis elegans Patched related
           family protein 2 protein.
          Length = 933

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 474 YFAINALCNPAESGGIPSSSSVHVLGSI*GH 382
           Y++   LC   ++GG PS+  VH+L  +  H
Sbjct: 133 YYSYKNLCLQYKNGGCPSNKHVHILSDLHNH 163


>AL132876-38|CAD21663.2|  224|Caenorhabditis elegans Hypothetical
           protein Y105E8A.14 protein.
          Length = 224

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 443 LNQEEFQALHQSMYWDQYKATHQLXLRFSXQCDTESTTSTIHQAP 309
           L +++  A  Q M+W  Y+  HQ   RF  + + E   +  HQ P
Sbjct: 118 LKKQQAAAAAQKMFW-LYRGRHQGWWRFDPRIEKEIEEAFTHQMP 161


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = -3

Query: 412 SPCTGINIRPLTSYXSGSVXNVIQNPPPAQSTKPLE 305
           +P T  N  P TS  SGS   + Q+P P+QST P+E
Sbjct: 848 APSTSQNPNPSTS--SGSSM-ITQSPYPSQSTSPVE 880


>U40942-9|AAC47074.6|  703|Caenorhabditis elegans Synaptogenesis
           abnormal protein 1 protein.
          Length = 703

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 228 ENAGTWEFGTYRCTAT 275
           EN  TW+ G Y CTAT
Sbjct: 408 ENVRTWQQGNYNCTAT 423


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,948,217
Number of Sequences: 27780
Number of extensions: 239037
Number of successful extensions: 667
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)