Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_G16
         (918 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.9  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.8  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   9.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   9.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   9.0  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 477 IYFAINALCNPAESGGIPSSSSVHVLGSI 391
           ++FA   L N     G P S S  VLG +
Sbjct: 614 VWFAWGVLLNSGIGEGTPRSFSARVLGMV 642


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 18  PSLLGAFLTDFCAFWGKXFNLPPKINRGXSTXLTQXIMVDK 140
           PS+L   ++ + +FW      PP+I  G +T LT   +  K
Sbjct: 241 PSILIVVIS-WVSFWLHMDASPPRIVLGTNTILTFMTLASK 280


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 461 MLYATLLNQEEFQALHQSMYW 399
           ML+  L N ++FQ  +++  W
Sbjct: 110 MLFELLYNAKDFQTFYKTAAW 130


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 461 MLYATLLNQEEFQALHQSMYW 399
           ML+  L N ++FQ  +++  W
Sbjct: 110 MLFELLYNAKDFQTFYKTAAW 130


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 228 ENAGTWEFGTYRC 266
           E +G W FGT  C
Sbjct: 102 EISGNWSFGTIMC 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,083
Number of Sequences: 438
Number of extensions: 3040
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)